U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    R1 starch-granule-bound R1 protein [ Solanum tuberosum (potato) ]

    Gene ID: 102577510, updated on 2-Nov-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    R1
    Gene description
    starch-granule-bound R1 protein
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Solanum tuberosum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
    Also known as
    GWD
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: Un
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    101 current SolTub_3.0 (GCF_000226075.1) Unplaced Scaffold NW_006239172.1 (954662..970119, complement)

    NW_006239172.1Genomic Context describing neighboring genes Neighboring gene lipase Neighboring gene uncharacterized LOC102587417

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_006239172.1 Unplaced Scaffold Reference SolTub_3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Functional domain organization of the potato alpha-glucan, water dikinase (GWD): evidence for separate site catalysis as revealed by limited proteolysis and deletion mutants. Mikkelsen R, et al. Biochem J, 2005 Jan 15. PMID 15361065, Free PMC Article
    2. Functional characterization of alpha-glucan,water dikinase, the starch phosphorylating enzyme. Mikkelsen R, et al. Biochem J, 2004 Jan 15. PMID 14525539, Free PMC Article
    3. The starch-related R1 protein is an alpha -glucan, water dikinase. Ritte G, et al. Proc Natl Acad Sci U S A, 2002 May 14. PMID 12011472, Free PMC Article
    4. Production of highly phosphorylated glycopolymers by expression of R1 in Escherichia coli. Viksø-Nielsen A, et al. Carbohydr Res, 2002 Feb 18. PMID 11841813
    5. Reversible binding of the starch-related R1 protein to the surface of transitory starch granules. Ritte G, et al. Plant J, 2000 Feb. PMID 10758490

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    alpha-glucan water dikinase, chloroplastic
    Names
    Alpha-glucan water dikinase, chloroplastic
    starch associated protein R1
    starch-related R1 protein
    NP_001275052.1
    XP_006357619.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001288123.1 → NP_001275052.1  alpha-glucan water dikinase, chloroplastic

      See identical proteins and their annotated locations for NP_001275052.1

      Status: PROVISIONAL

      Source sequence(s)
      EU599037
      UniProtKB/Swiss-Prot
      O82061, Q9AWA5
      UniProtKB/TrEMBL
      B2M0R3
      Conserved Domains (1) summary
      pfam01326
      Location:1265 → 1462
      PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain

    RefSeqs of Annotated Genomes: Solanum tuberosum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference SolTub_3.0 Primary Assembly

    Genomic

    1. NW_006239172.1 Reference SolTub_3.0 Primary Assembly

      Range
      954662..970119 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006357557.2 → XP_006357619.1  alpha-glucan water dikinase, chloroplastic isoform X1

      UniProtKB/Swiss-Prot
      O82061, Q9AWA5
      UniProtKB/TrEMBL
      M1ACN9
      Conserved Domains (1) summary
      pfam01326
      Location:1266 → 1463
      PPDK_N; Pyruvate phosphate dikinase, PEP/pyruvate binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9AWA5.2 GenPept UniProtKB/Swiss-Prot:Q9AWA5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials