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Select item 117220181.

Disentangling the phenotypic patterns of hypertension and chronic hypotension

William W. Stead, Adam Lewis, Nunzia B. Giuse, Annette M. Williams, Italo Biaggioni, Lisa Bastarache

J Biomed Inform. Author manuscript; available in PMC 2025 Jan 10.

Published in final edited form as: J Biomed Inform. 2024 Nov; 159: 104743. Published online 2024 Oct 31. doi: 10.1016/j.jbi.2024.104743

PMCID:: PMC11722018

Article PDF–2.0M

Select item 111414282.

Identifying Social Determinants of Health from Clinical Narratives: A Study of Performance, Documentation Ratio, and Potential Bias

Zehao Yu, Cheng Peng, Xi Yang, Chong Dang, Prakash Adekkanattu, Braja Gopal Patra, Yifan Peng, Jyotishman Pathak, Debbie L. Wilson, Ching-Yuan Chang, Wei-Hsuan Lo-Ciganic, Thomas J. George, William R. Hogan, Yi Guo, Jiang Bian, Yonghui Wu

J Biomed Inform. Author manuscript; available in PMC 2024 May 31.

Published in final edited form as: J Biomed Inform. 2024 May; 153: 104642. Published online 2024 Apr 14. doi: 10.1016/j.jbi.2024.104642

PMCID:: PMC11141428

Article PDF–400K

Select item 118073503.

Automatic categorization of self-acknowledged limitations in randomized controlled trial publications

Mengfei Lan, Mandy Cheng, Linh Hoang, Gerben ter Riet, Halil Kilicoglu

J Biomed Inform. Author manuscript; available in PMC 2025 Feb 9.

Published in final edited form as: J Biomed Inform. 2024 Apr; 152: 104628. Published online 2024 Mar 26. doi: 10.1016/j.jbi.2024.104628

PMCID:: PMC11807350

Article PDF–1.4M

Select item 110655604.

Model Tuning or Prompt Tuning? A Study of Large Language Models for Clinical Concept and Relation Extraction

Cheng Peng, Xi Yang, Kaleb E Smith, Zehao Yu, Aokun Chen, Jiang Bian, Yonghui Wu

J Biomed Inform. Author manuscript; available in PMC 2024 May 3.

Published in final edited form as: J Biomed Inform. 2024 May; 153: 104630. Published online 2024 Mar 26. doi: 10.1016/j.jbi.2024.104630

PMCID:: PMC11065560

Article PDF–456K

Select item 116084535.

SPeC: A Soft Prompt-Based Calibration on Performance Variability of Large Language Model in Clinical Notes Summarization

Yu-Neng Chuang, Ruixiang Tang, Xiaoqian Jiang, Xia Hu

J Biomed Inform. Author manuscript; available in PMC 2024 Dec 1.

Published in final edited form as: J Biomed Inform. 2024 Mar; 151: 104606. Published online 2024 Feb 5. doi: 10.1016/j.jbi.2024.104606

PMCID:: PMC11608453

Article PDF–554K

Select item 112125076.

Clinical natural language processing for secondary uses

Yanjun Gao, Diwakar Mahajan, Özlem Uzuner, Meliha Yetisgen

J Biomed Inform. Author manuscript; available in PMC 2024 Jun 28.

Published in final edited form as: J Biomed Inform. 2024 Feb; 150: 104596. Published online 2024 Jan 24. doi: 10.1016/j.jbi.2024.104596

PMCID:: PMC11212507

Article PDF–77K

Select item 109223727.

Useful Blunders: Can Automated Speech Recognition Errors Improve Downstream Dementia Classification?

Changye Li, Weizhe Xu, Trevor Cohen, Serguei Pakhomov

J Biomed Inform. Author manuscript; available in PMC 2025 Feb 1.

Published in final edited form as: J Biomed Inform. 2024 Feb; 150: 104598. Published online 2024 Jan 20. doi: 10.1016/j.jbi.2024.104598

PMCID:: PMC10922372

Article PDF–2.2M

Select item 110028718.

One-Shot Distributed Algorithms for Addressing Heterogeneity in Competing Risks Data across Clinical Sites

Dazheng Zhang, Jiayi Tong, Ronen Stein, Yiwen Lu, Naimin Jing, Yuchen Yang, Mary R. Boland, Chongliang Luo, Robert N. Baldassano, Raymond J. Carroll, Christopher B. Forrest, Yong Chen

J Biomed Inform. Author manuscript; available in PMC 2025 Feb 1.

Published in final edited form as: J Biomed Inform. 2024 Feb; 150: 104595. Published online 2024 Jan 18. doi: 10.1016/j.jbi.2024.104595

PMCID:: PMC11002871

Article PDF–1.7M

Select item 109231269.

MultiWD: Multi-label wellness dimensions in social media posts

Muskan Garg, Xingyi Liu, M.S.V.P.J. Sathvik, Shaina Raza, Sunghwan Sohn

J Biomed Inform. Author manuscript; available in PMC 2025 Feb 1.

Published in final edited form as: J Biomed Inform. 2024 Feb; 150: 104586. Published online 2024 Jan 6. doi: 10.1016/j.jbi.2024.104586

PMCID:: PMC10923126

Article PDF–1001K

Select item 1099639210.

Learning from vertically distributed data across multiple sites: An efficient privacy-preserving algorithm for Cox proportional hazards model with variable selection

Guanhong Miao, Lei Yu, Jingyun Yang, David A. Bennett, Jinying Zhao, Samuel S. Wu

J Biomed Inform. Author manuscript; available in PMC 2025 Jan 1.

Published in final edited form as: J Biomed Inform. 2024 Jan; 149: 104581. Published online 2023 Dec 23. doi: 10.1016/j.jbi.2023.104581

PMCID:: PMC10996392

Article PDF–1.0M

Select item 1146789311.

Deep learning uncertainty quantification for clinical text classification

Alina Peluso, Ioana Danciu, Hong-Jun Yoon, Jamaludin Mohd Yusof, Tanmoy Bhattacharya, Adam Spannaus, Noah Schaefferkoetter, Eric B. Durbin, Xiao-Cheng Wu, Antoinette Stroup, Jennifer Doherty, Stephen Schwartz, Charles Wiggins, Linda Coyle, Lynne Penberthy, Georgia D. Tourassi, Shang Gao

J Biomed Inform. Author manuscript; available in PMC 2024 Oct 11.

Published in final edited form as: J Biomed Inform. 2024 Jan; 149: 104576. Published online 2023 Dec 13. doi: 10.1016/j.jbi.2023.104576

PMCID:: PMC11467893

Article PDF–3.1M

Select item 1084277712.

Enhanced family history-based algorithms increase the identification of individuals meeting criteria for genetic testing of hereditary cancer syndromes but would not reduce disparities on their own

Richard L. Bradshaw, Kensaku Kawamoto, Jemar R. Bather, Melody S. Goodman, Wendy K. Kohlmann, Daniel Chavez-Yenter, Molly Volkmar, Rachel Monahan, Kimberly A. Kaphingst, Guilherme Del Fiol

J Biomed Inform. Author manuscript; available in PMC 2024 Feb 5.

Published in final edited form as: J Biomed Inform. 2024 Jan; 149: 104568. Published online 2023 Dec 9. doi: 10.1016/j.jbi.2023.104568

PMCID:: PMC10842777

Article PDF–151K

Select item 1119246513.

Efficient Adversarial debiasing with Concept Activation Vector - medical image case-studies

Ramon Correa, Khushbu Pahwa, Bhavik Patel, Celine M. Vachon, Judy W. Gichoya, Imon Banerjee

J Biomed Inform. Author manuscript; available in PMC 2024 Jun 21.

Published in final edited form as: J Biomed Inform. 2024 Jan; 149: 104548. Published online 2023 Dec 1. doi: 10.1016/j.jbi.2023.104548

PMCID:: PMC11192465

Article PDF–628K

Select item 1085091814.

Fair Patient Model: Mitigating Bias in the Patient Representation Learned from the Electronic Health Records

Sonish Sivarajkumar, Yufei Huang, Yanshan Wang

J Biomed Inform. Author manuscript; available in PMC 2024 Dec 1.

Published in final edited form as: J Biomed Inform. 2023 Dec; 148: 104544. Published online 2023 Nov 22. doi: 10.1016/j.jbi.2023.104544

PMCID:: PMC10850918

Article PDF–815K

Select item 1161992315.

A transformer-based deep learning approach for fairly predicting post-liver transplant risk factors

Can Li, Xiaoqian Jiang, Kai Zhang

J Biomed Inform. Author manuscript; available in PMC 2024 Dec 5.

Published in final edited form as: J Biomed Inform. 2024 Jan; 149: 104545. Published online 2023 Nov 20. doi: 10.1016/j.jbi.2023.104545

PMCID:: PMC11619923

Article PDF–1.9M

Select item 1081580216.

Theory of Trust and Acceptance of Artificial Intelligence Technology (TrAAIT): An Instrument to Assess Clinician Trust and Acceptance of Artificial Intelligence

Alexander F Stevens, Pete Stetson

J Biomed Inform. Author manuscript; available in PMC 2024 Dec 1.

Published in final edited form as: J Biomed Inform. 2023 Dec; 148: 104550. Published online 2023 Nov 20. doi: 10.1016/j.jbi.2023.104550

PMCID:: PMC10815802

Article PDF–1.4M

Select item 1080213817.

A methodology of phenotyping ICU patients from EHR data: High-fidelity, personalized, and interpretable phenotypes estimation

Yanran Wang, J.N. Stroh, George Hripcsak, Cecilia C. Low Wang, Tellen D. Bennett, Julia Wrobel, Caroline Der Nigoghossian, Scott W. Mueller, Jan Claassen, D.J. Albers

J Biomed Inform. Author manuscript; available in PMC 2024 Jan 22.

Published in final edited form as: J Biomed Inform. 2023 Dec; 148: 104547. Published online 2023 Nov 18. doi: 10.1016/j.jbi.2023.104547