Entry - #612164 - DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 4; DEE4 - OMIM
# 612164

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 4; DEE4


Alternative titles; symbols

EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 4; EIEE4


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
9q34.11 Developmental and epileptic encephalopathy 4 612164 AD, AR 3 STXBP1 602926
Clinical Synopsis
 
Phenotypic Series
 

INHERITANCE
- Autosomal dominant
- Autosomal recessive (in 1 family)
HEAD & NECK
Eyes
- Poor visual pursuit
NEUROLOGIC
Central Nervous System
- Epileptic encephalopathy
- Seizures, clonic-tonic
- Seizures, tonic
- Seizures, myoclonic
- Seizures, absence
- Seizures, atonic
- Focal dyscognitive seizures
- Hypsarrhythmia
- Status epilepticus
- Developmental regression
- Impaired intellectual development, severe to profound
- No language development
- Learning disability
- Hypotonia
- Tremor
- Spastic paraplegia
- Spastic quadriplegia
- Brain hypomyelination
- Thin corpus callosum
- Cerebral atrophy
- Suppression-burst pattern seen on EEG
- Hypsarrhythmia
- Multifocal discharges
- West syndrome
MISCELLANEOUS
- Onset in neonatal period or infancy
- Seizures are usually intractable
- Seizures may be fever-sensitive
- Variable severity
- De novo mutation (in most patients)
- Homozygous STXBP1 mutation reported in 2 siblings (last curated November 2022)
MOLECULAR BASIS
- Caused by mutation in the syntaxin-binding protein 1 gene (STXBP1, 602926.0001)
Developmental and epileptic encephalopathy - PS308350 - 118 Entries
Location Phenotype Inheritance Phenotype
mapping key
Phenotype
MIM number
Gene/Locus Gene/Locus
MIM number
1p34.2 Developmental and epileptic encephalopathy 18 AR 3 615476 SZT2 615463
1p34.1 Developmental and epileptic encephalopathy 15 AR 3 615006 ST3GAL3 606494
1p32.3 Developmental and epileptic encephalopathy 75 AR 3 618437 PARS2 612036
1p31.3 Developmental and epileptic encephalopathy 23 AR 3 615859 DOCK7 615730
1p13.3 Developmental and epileptic encephalopathy 32 AD 3 616366 KCNA2 176262
1q21.2 Developmental and epileptic encephalopathy 113 AR 3 620772 SV2A 185860
1q23.2 Developmental and epileptic encephalopathy 98 AD 3 619605 ATP1A2 182340
1q25.3 Developmental and epileptic encephalopathy 69 AD 3 618285 CACNA1E 601013
1q25.3 Developmental and epileptic encephalopathy 116 AD 3 620806 GLUL 138290
1q31.3 Developmental and epileptic encephalopathy 57 AD 3 617771 KCNT2 610044
1q42.11 Developmental and epileptic encephalopathy 100 AD 3 619777 FBXO28 609100
1q42.2 Developmental and epileptic encephalopathy 38 AR 3 617020 ARV1 611647
1q44 Developmental and epileptic encephalopathy 54 AD 3 617391 HNRNPU 602869
2p23.3 Developmental and epileptic encephalopathy 50 AR 3 616457 CAD 114010
2p15 ?Developmental and epileptic encephalopathy 88 AR 3 618959 MDH1 154200
2p15 Developmental and epileptic encephalopathy 83 AR 3 618744 UGP2 191760
2q24.3 Developmental and epileptic encephalopathy 62 AD 3 617938 SCN3A 182391
2q24.3 Developmental and epileptic encephalopathy 11 AD 3 613721 SCN2A 182390
2q24.3 Developmental and epileptic encephalopathy 6B, non-Dravet AD 3 619317 SCN1A 182389
2q24.3 Dravet syndrome AD 3 607208 SCN1A 182389
2q31.1 Developmental and epileptic encephalopathy 89 AR 3 619124 GAD1 605363
2q31.1 Developmental and epileptic encephalopathy 39 AR 3 612949 SLC25A12 603667
2q32.2 Developmental and epileptic encephalopathy 71 AR 3 618328 GLS 138280
3p22.1 Developmental and epileptic encephalopathy 68 AR 3 618201 TRAK1 608112
3p21.31 ?Developmental and epileptic encephalopathy 86 AR 3 618910 DALRD3 618904
3p21.31 Developmental and epileptic encephalopathy 102 AR 3 619881 SLC38A3 604437
3q13.31 Developmental and epileptic encephalopathy 93 AD 3 618012 ATP6V1A 607027
3q22.1 Developmental and epileptic encephalopathy 44 AR 3 617132 UBA5 610552
3q25.1 Developmental and epileptic encephalopathy 73 AD 3 618379 RNF13 609247
3q28-q29 Developmental and epileptic encephalopathy 47 AD 3 617166 FGF12 601513
4p16.3 Developmental and epileptic encephalopathy 63 AR 3 617976 CPLX1 605032
4p14 Developmental and epileptic encephalopathy 84 AR 3 618792 UGDH 603370
4p12 ?Developmental and epileptic encephalopathy 40 AR 3 617065 GUF1 617064
4p12 Developmental and epileptic encephalopathy 78 AD 3 618557 GABRA2 137140
4p12 Developmental and epileptic encephalopathy 45 AD 3 617153 GABRB1 137190
4q24 Developmental and epileptic encephalopathy 91 AD 3 617711 PPP3CA 114105
4q35.1 Developmental and epileptic encephalopathy 106 AR 3 620028 UFSP2 611482
5p12 Developmental and epileptic encephalopathy 24 AD 3 615871 HCN1 602780
5q33.3 Developmental and epileptic encephalopathy 65 AD 3 618008 CYFIP2 606323
5q34 Developmental and epileptic encephalopathy 92 AD 3 617829 GABRB2 600232
5q34 Developmental and epileptic encephalopathy 19 AD 3 615744 GABRA1 137160
5q34 Developmental and epileptic encephalopathy 74 AD 3 618396 GABRG2 137164
6p24.1 Developmental and epileptic encephalopathy 70 AD 3 618298 PHACTR1 608723
6p21.1 Developmental and epileptic encephalopathy 60 AR 3 617929 CNPY3 610774
6q21 Developmental and epileptic encephalopathy 87 AD 3 618916 CDK19 614720
7q11.23 Developmental and epileptic encephalopathy 51 AR 3 617339 MDH2 154100
7q11.23 Developmental and epileptic encephalopathy 56 AD 3 617665 YWHAG 605356
7q21.11 Developmental and epileptic encephalopathy 110 AR 3 620149 CACNA2D1 114204
7q21.12 Developmental and epileptic encephalopathy 61 AR 3 617933 ADAM22 603709
7q22.1 Developmental and epileptic encephalopathy 76 AR 3 618468 ACTL6B 612458
8p21.3 Developmental and epileptic encephalopathy 64 AD 3 618004 RHOBTB2 607352
9q21.33 Developmental and epileptic encephalopathy 58 AD 3 617830 NTRK2 600456
9q22.33 Developmental and epileptic encephalopathy 59 AD 3 617904 GABBR2 607340
9q31.3 Developmental and epileptic encephalopathy 37 AR 3 616981 FRRS1L 604574
9q34.11 Developmental and epileptic encephalopathy 4 AD, AR 3 612164 STXBP1 602926
9q34.11 Developmental and epileptic encephalopathy 31B, autosomal recessive AR 3 620352 DNM1 602377
9q34.11 Developmental and epileptic encephalopathy 31A, autosomal dominant AD 3 616346 DNM1 602377
9q34.11 Developmental and epileptic encephalopathy 5 AD 3 613477 SPTAN1 182810
9q34.3 Developmental and epileptic encephalopathy 14 AD 3 614959 KCNT1 608167
9q34.3 Developmental and epileptic encephalopathy 101 AR 3 619814 GRIN1 138249
10p14 Developmental and epileptic encephalopathy 97 AD 3 619561 CELF2 602538
11p15.5 Developmental and epileptic encephalopathy 3 AR 3 609304 SLC25A22 609302
11p15.4 Developmental and epileptic encephalopathy 49 AR 3 617281 DENND5A 617278
11p13 Developmental and epileptic encephalopathy 41 AD 3 617105 SLC1A2 600300
12p13.31 Developmental and epileptic encephalopathy 21 AR 3 615833 NECAP1 611623
12p13.1 Developmental and epileptic encephalopathy 27 AD 3 616139 GRIN2B 138252
12q13.13 Developmental and epileptic encephalopathy 13 AD 3 614558 SCN8A 600702
12q21.1 Developmental and epileptic encephalopathy 103 AD 3 619913 KCNC2 176256
12q24.11-q24.12 Developmental and epileptic encephalopathy 67 AD 3 618141 CUX2 610648
14q23.2 Developmental and epileptic encephalopathy 112 AD 3 620537 KCNH5 605716
14q32.33 Developmental and epileptic encephalopathy 66 AD 3 618067 PACS2 610423
15q12 Developmental and epileptic encephalopathy 43 AD 3 617113 GABRB3 137192
15q12 Developmental and epileptic encephalopathy 79 AD 3 618559 GABRA5 137142
15q21.2 Developmental and epileptic encephalopathy 81 AR 3 618663 DMXL2 612186
15q21.3 Developmental and epileptic encephalopathy 80 AR 3 618580 PIGB 604122
15q25.2 Developmental and epileptic encephalopathy 48 AR 3 617276 AP3B2 602166
15q26.1 Developmental and epileptic encephalopathy 94 AD 3 615369 CHD2 602119
16p13.3 Multiple congenital anomalies-hypotonia-seizures syndrome 4 AR 3 618548 PIGQ 605754
16p13.3 Developmental and epileptic encephalopathy 16 AR 3 615338 TBC1D24 613577
16q13 Developmental and epileptic encephalopathy 17 AD 3 615473 GNAO1 139311
16q21 Developmental and epileptic encephalopathy 82 AR 3 618721 GOT2 138150
16q22.1 Developmental and epileptic encephalopathy 29 AR 3 616339 AARS1 601065
16q23.1-q23.2 Developmental and epileptic encephalopathy 28 AR 3 616211 WWOX 605131
17p13.1 Developmental and epileptic encephalopathy 25, with amelogenesis imperfecta AR 3 615905 SLC13A5 608305
17q11.2 Developmental and epileptic encephalopathy 95 AR 3 618143 PIGS 610271
17q12 Developmental and epileptic encephalopathy 72 AD 3 618374 NEUROD2 601725
17q21.2 Developmental and epileptic encephalopathy 104 AD 3 619970 ATP6V0A1 192130
17q21.31 Developmental and epileptic encephalopathy 96 AD 3 619340 NSF 601633
17q21.32 Developmental and epileptic encephalopathy 115 AR 3 620783 SNF8 610904
17q25.1 Developmental and epileptic encephalopathy 105 with hypopituitarism AR 3 619983 HID1 605752
19p13.3 Developmental and epileptic encephalopathy 109 AD 3 620145 FZR1 603619
19p13.13 Developmental and epileptic encephalopathy 42 AD 3 617106 CACNA1A 601011
19p13.11 Developmental and epileptic encephalopathy 108 AD 3 620115 MAST3 612258
19q13.11 Developmental and epileptic encephalopathy 52 AR 3 617350 SCN1B 600235
19q13.2 Developmental and epileptic encephalopathy 99 AD 3 619606 ATP1A3 182350
19q13.33 Developmental and epileptic encephalopathy 46 AD 3 617162 GRIN2D 602717
19q13.33 Microcephaly, seizures, and developmental delay AR 3 613402 PNKP 605610
20p13 Developmental and epileptic encephalopathy 35 AR 3 616647 ITPA 147520
20p12.3 Developmental and epileptic encephalopathy 12 AR 3 613722 PLCB1 607120
20p11.21 Developmental and epileptic encephalopathy 107 AR 3 620033 NAPB 611270
20q11.23 Developmental and epileptic encephalopathy 114 AD 3 620774 SLC32A1 616440
20q13.12 Developmental and epileptic encephalopathy 34 AR 3 616645 SLC12A5 606726
20q13.13 Developmental and epileptic encephalopathy 26 AD 3 616056 KCNB1 600397
20q13.33 Developmental and epileptic encephalopathy 7 AD 3 613720 KCNQ2 602235
20q13.33 Developmental and epileptic encephalopathy 33 AD 3 616409 EEF1A2 602959
21q22.11 Developmental and epileptic encephalopathy 53 AR 3 617389 SYNJ1 604297
21q22.13 Developmental and epileptic encephalopathy 55 AR 3 617599 PIGP 605938
21q22.3 Developmental and epileptic encephalopathy 30 AD 3 616341 SIK1 605705
22q12.2-q12.3 Developmental and epileptic encephalopathy 111 AR 3 620504 DEPDC5 614191
Xp22.2 Multiple congenital anomalies-hypotonia-seizures syndrome 2 XLR 3 300868 PIGA 311770
Xp22.13 Developmental and epileptic encephalopathy 2 XLD 3 300672 CDKL5 300203
Xp21.3 Developmental and epileptic encephalopathy 1 XLR 3 308350 ARX 300382
Xp11.23 Congenital disorder of glycosylation, type IIm SMo, XLD 3 300896 SLC35A2 314375
Xp11.22 Developmental and epileptic encephalopathy 85, with or without midline brain defects XLD 3 301044 SMC1A 300040
Xq11.1 Developmental and epileptic encephalopathy 8 XL 3 300607 ARHGEF9 300429
Xq22.1 Developmental and epileptic encephalopathy 9 XL 3 300088 PCDH19 300460
Xq23 Developmental and epileptic encephalopathy 36 XL 3 300884 ALG13 300776
Xq26.3-q27.1 Developmental and epileptic encephalopathy 90 XLD, XLR 3 301058 FGF13 300070

TEXT

A number sign (#) is used with this entry because of evidence that developmental and epileptic encephalopathy-4 (DEE4) is caused by heterozygous mutation in the STXBP1 gene (602926) on chromosome 9q34. One family has been reported with a homozygous mutation in the STXBP1 gene.


Description

Developmental and epileptic encephalopathy-4 (DEE4) is a neurologic disorder characterized by the onset of tonic seizures in early infancy (usually in first months of life). In most cases, seizures increase in frequency and become refractory. Affected individuals have profoundly impaired psychomotor development with poor head control, limited or no ability to walk, spastic quadriplegia, and poor or absent speech. Brain imaging may show cortical atrophy and hypomyelination. EEG studies in the more severe cases show a burst-suppression pattern, consistent with a clinical diagnosis of Ohtahara syndrome, and/or hypsarrhythmia, consistent with a clinical diagnosis of West syndrome. Less severely affected individuals have later onset of seizures (summary by Saitsu et al., 2008; Hamdan et al., 2009).

For a general phenotypic description and a discussion of genetic heterogeneity of developmental and epileptic encephalopathy, see 308350.


Clinical Features

Saitsu et al. (2008) reported 4 unrelated Japanese patients who presented with tonic seizures between 10 days and 3 months of age. All patients had a burst-suppression pattern on EEG, consistent with a clinical diagnosis of Ohtahara syndrome; several patients showed hypsarrhythmia on EEG, consistent with West syndrome. Three patients continued to have refractory seizures, whereas the patient with onset at 10 days had remission of seizures at 3 months. All 4 patients had severe to profoundly impaired psychomotor development with intellectual disability, poor motor and language skills, and spastic di- or quadriplegia. Brain imaging showed cerebral atrophy and delayed myelination.

Deprez et al. (2010) identified heterozygous truncating mutations in the STXBP1 gene in 6 (5.7%) of 106 patients with various types of early-onset epileptic encephalopathies. Variable seizures first occurred between 3 days and 4.5 months of life, and all patients subsequently had severe to profound mental retardation. Three patients developed hypsarrhythmia by 5 months of age, consistent with a clinical diagnosis of West syndrome. Four patients showed an initial favorable response to vigabatrin and became seizure-free later in childhood even without medication, but 2 had continued seizures despite treatment with antiepileptic medications. None of the patients had a burst-suppression pattern on EEG, as had been observed in the patients reported by Saitsu et al. (2008). Three patients were wheelchair-bound due to hypotonia or dyskinesias. Five patients had proven de novo mutations; parental DNA from the sixth patient was not available. Deprez et al. (2010) emphasized the phenotypic variability in the severity of the epilepsy, but noted that all patients had mental retardation, which suggested that neurodegeneration is an intrinsic property of the disorder.

Clinical Variability

Hamdan et al. (2009) reported 2 unrelated French Canadian patients with developmental delay associated with early-onset seizures. Patient 1 was a 27-year-old woman who developed partial complex seizures at age 6 weeks. Patient 2 was a 15-year-old girl who developed partial complex seizures at 2 years, 9 months of age. Both patients had severely impaired intellectual development, hypotonia, and tremor. Brain imaging in both patients was normal; burst-suppression and hypsarrhythmia were not observed. Hamdan et al. (2009) noted that the phenotypes of these patients were slightly different from that reported by Saitsu et al. (2008), with later onset of seizures and some response to antiepileptic medication.

Carvill et al. (2014) reported 3 unrelated patients with DEE4, who were clinically diagnosed with Dravet syndrome. The patients had onset of seizures between 6 and 12 months of age, which the authors noted was later than other patients with this disorder. Seizure types included tonic-clonic, absence, atonic, myoclonic, focal dyscognitive, and status epilepticus. The seizures were fever-sensitive. Two patients showed developmental regression and had severely impaired intellectual development, whereas the third patient had learning difficulties. EEG in the patients with more severe outcomes showed multifocal discharges, whereas EEG in the patient with mild features was normal. One severely affected patient showed cerebral atrophy on brain MRI, and the other severely affected patient died at age 11 years.

Lammertse et al. (2020) reported 2 female sibs, aged 23 and 26 years, with DEE4. The 23-year-old patient presented from birth with refractory epilepsy, developmental delay, impaired intellectual development, and behavioral abnormalities. The 26-year-old patient was similarly affected but had more moderately impaired intellectual development. The seizure phenotype for both patients was clinically Lennox-Gastaut syndrome.


Inheritance

The heterozygous mutations in the STXBP1 gene that were identified in patients with DEE4 by Saitsu et al. (2008) occurred de novo.

Saitsu et al. (2011) reported a girl with DEE4 who inherited a heterozygous truncating mutation in the STXBP1 gene from her unaffected father, who was somatic mosaic for the mutation. Cloning of PCR products amplified with the paternal DNA samples extracted from his blood, saliva, buccal cells, and nails suggested that 5.3%, 8.7%, 11.9%, and 16.9% of alleles harbored the mutation, respectively. Although sperm was not tested, the father likely carried the mutation in the mosaic state in his germ cells. Saitsu et al. (2011) emphasized the importance of the finding for genetic counseling, as recurrence of the disorder in this family is possible.

Lammertse et al. (2020) reported a family with DEE4 with a homozygous mutation in the STXBP1 gene.


Cytogenetics

In a 29-month-old Japanese girl with early-onset epileptic encephalopathy and cerebral hypomyelination (Tohyama et al., 2008), Saitsu et al. (2008) identified a de novo heterozygous 2.0-Mb microdeletion at chromosome 9q33.3-q34.11 including the STXBP1 gene. Forty other genes mapped within the deletion. Saitsu et al. (2010) later reported that the microdeletion in this patient was 2.25 Mb long and encompassed both the STXBP1 and SPTAN1 (182810) genes. Saitsu et al. (2010) hypothesized that this patient's phenotype was due more to haploinsufficiency of STXBP1, but that haploinsufficiency of SPTAN1 may have had some effect on myelination, because dominant-negative SPTAN1 mutations cause a similar phenotype with hypomyelination and widespread brain atrophy (DEE5; 613477). The patient was originally reported by Tohyama et al. (2008) as presenting with tonic seizures, tremulous arm movements, and oral automatisms at 45 days of age. The pregnancy resulted from in vivo fertilization; her dizygotic twin was unaffected. She continued to have seizures with increased frequency; EEG showed a suppression-burst pattern and hypsarrhythmia, consistent with a clinical diagnosis of West syndrome. She had severely delayed psychomotor development with no language acquisition, inability to sit, spastic quadriplegia, poor visual attention, and poor overall growth with microcephaly (-3.9 SD). Brain MRI showed diffuse hypomyelination, cortical atrophy, and a thin corpus callosum.

Using array CGH, Saitsu et al. (2012) identified 2 different de novo heterozygous deletions involving the STXBP1 gene in 2 (7.1%) of 28 patients with cryptogenic early-onset epileptic encephalopathy. One was a 4.6-kb deletion involving only exon 4 of the STXBP1 gene, and the other was a 2.85-Mb deletion involving 70 genes, including both STXBP1 and SPTAN1. The patient with the smaller deletion developed tonic and myoclonic seizures on day 32 of life. EEG showed a suppression-burst pattern, and brain MRI was normal. Seizure frequency was reduced with high-dose phenobarbital. The patient with the larger deletion had multiple anomalies, including low birth weight, cleft lip and palate, ventricular septal defect, small penis, thin corpus callosum, and small cerebellum. Seizures with suppression-burst pattern on EEG developed around age 1 month. At 19 months, the child showed spastic quadriplegia and profound intellectual disability. Analysis of the breakpoints in both patients suggested that nonhomologous recombination led to the rearrangements.


Molecular Genetics

In 4 unrelated Japanese patients with DEE4, Saitsu et al. (2008) identified heterozygous missense mutations in the STXBP1 gene (602926.0001-602926.0004). The mutations were proven to occur de novo in 3 patients. All mutations occurred in the hydrophobic core of the protein and were predicted to result in destabilization and disruption of protein structure. In vitro studies of the mutant proteins suggested a tendency for aggregation. Saitsu et al. (2008) postulated that the mutations resulted in STXBP1 haploinsufficiency, causing impaired synaptic vesicle release and the DEE phenotype.

In 2 unrelated French Canadian patients with severe mental retardation and epilepsy, Hamdan et al. (2009) identified respective de novo heterozygous truncating mutations in the STXBP1 gene (602926.0005 and 602926.0006). The patients were ascertained from a larger group of 95 patients with idiopathic mental retardation.

In an 11-year-old boy with DEE4, who had a clinical diagnosis of Dravet syndrome but was negative for mutations in the SCN1A gene (182389), Carvill et al. (2014) identified a de novo heterozygous missense mutation in the STXBP1 gene (E283K; 602926.0008). The mutation was found by whole-exome sequencing. Targeted resequencing of 67 patients with a similar disorder identified 2 additional probands with de novo heterozygous missense mutations in the STXBP1 gene. Functional studies of the variants were not performed.

In 2 sibs with DEE4, Lammertse et al. (2020) identified a homozygous missense mutation in the STXBP1 gene (L446F; 602926.0009). The mother and an asymptomatic sib were heterozygous for the mutation; the father was not available for study. Expression of STXBP1 with the L446F mutation in STXBP1-null mouse neurons resulted in shorter dendrites and fewer synapses per dendrite compared to cells expressing wildtype STXBP1. Patch-clamp studies in the mutant cells demonstrated an increased evoked synaptic transmission and impaired recovery after high-frequency stimulation. This appeared to be due to an increased synaptic vesicle response after stimulation with a single action potential. Lammertse et al. (2020) concluded that the L446F mutation leads to a gain-of-function pathogenic mechanism.


Genotype/Phenotype Correlations

In a review of clinical and molecular data from 271 patients with DEE4, Xian et al. (2022) identified 54 recurrent mutations in the STXBP1 gene. Sixteen of the mutations were identified in 5 or more patients, with the most common mutations being R406H (in 20 patients), R406C (in 20 patients), and R292H (in 18 patients). Compared to the entire cohort of patients, those with recurrent mutations did not show an overall phenotypic similarity. However, patients with R406H and R406C mutations were more likely to have a burst suppression pattern on EEG and spastic tetraplegia, and less likely to have ataxia, compared to the rest of the cohort. Additionally, patients with premature termination mutations or deletions in the STXBP1 gene were more likely to have infantile spasms, hypsarrhythmia on EEG, ataxia, hypotonia, and neonatal seizure onset compared to patients with missense mutations.


REFERENCES

  1. Carvill, G. L., Weckhuysen, S., McMahon, J. M., Hartmann, C., Moller, R. S., Hjalgrim, H., Cook, J., Geraghty, E., O'Roak, B. J., Petrou, S., Clarke, A., Gill, D., and 14 others. GABRA1 and STXBP1: novel genetic causes of Dravet syndrome. Neurology 82: 1245-1253, 2014. [PubMed: 24623842, related citations] [Full Text]

  2. Deprez, L., Weckhuysen, S., Holmgren, P., Suls, A., Van Dyck, T., Goossens, D., Del-Favero, J., Jansen, A., Verhaert, K., Lagae, L., Jordanova, A., Van Coster, R., Yendle, S., Berkovic, S. F., Scheffer, I., Ceulemans, B., De Jonghe, P. Clinical spectrum of early-onset epileptic encephalopathies associated with STXBP1 mutations. Neurology 75: 1159-1165, 2010. [PubMed: 20876469, related citations] [Full Text]

  3. Hamdan, F. F., Piton, A., Gauthier, J., Lortie, A., Dubeau, F., Dobrzeniecka, S., Spiegelman, D., Noreau, A., Pellerin, S., Cote, M., Henrion, E., Fombonne, E., Mottron, L., Marineau, C., Drapeau, P., Lafreniere, R. G., Lacaille, J. C., Rouleau, G. A., Michaud, J. L. De novo STXBP1 mutations in mental retardation and nonsyndromic epilepsy. Ann. Neurol. 65: 748-753, 2009. [PubMed: 19557857, related citations] [Full Text]

  4. Lammertse, H. C. A., van Berkel, A. A., Iacomino, M., Toonen, R. F., Striano, P., Gambardella, A., Verhage, M., Zara, F. Homozygous STXBP1 variant causes encephalopathy and gain-of-function in synaptic transmission. Brain 143: 441-451, 2020. [PubMed: 31855252, images, related citations] [Full Text]

  5. Saitsu, H., Hoshino, H., Kato, M., Nishiyama, K., Okada, I., Yoneda, Y., Tsurusaki, Y., Doi, H., Miyake, N., Kubota, M., Hayasaka, K., Matsumoto, N. Paternal mosaicism of an STXBP1 mutation in OS. Clin. Genet. 80: 484-488, 2011. [PubMed: 21062273, related citations] [Full Text]

  6. Saitsu, H., Kato, M., Mizuguchi, T., Hamada, K., Osaka, H., Tohyama, J., Uruno, K., Kumada, S., Nishiyama, K., Nishimura, A., Okada, I., Yoshimura, Y., Hirai, S., Kumada, T., Hayasaka, K., Fukuda, A., Ogata, K., Matsumoto, N. De novo mutations in the gene encoding STXBP1 (MUNC18-1) cause early infantile epileptic encephalopathy. Nature Genet. 40: 782-788, 2008. [PubMed: 18469812, related citations] [Full Text]

  7. Saitsu, H., Kato, M., Shimono, M., Senju, A., Tanabe, S., Kimura, T., Nishiyama, K., Yoneda, Y., Kondo, Y., Tsurusaki, Y., Doi, H., Miyake, N., Hayasaka, K., Matsumoto, N. Association of genomic deletions in the STXBP1 gene with Ohtahara syndrome. (Letter) Clin. Genet. 81: 399-402, 2012. [PubMed: 22211739, related citations] [Full Text]

  8. Saitsu, H., Tohyama, J., Kumada, T., Egawa, K., Hamada, K., Okada, I., Mizuguchi, T., Osaka, H., Miyata, R., Furukawa, T., Haginoya, K., Hoshino, H., and 15 others. Dominant-negative mutations in alpha-II spectrin cause West syndrome with severe cerebral hypomyelination, spastic quadriplegia, and developmental delay. Am. J. Hum. Genet. 86: 881-891, 2010. [PubMed: 20493457, images, related citations] [Full Text]

  9. Tohyama, J., Akasaka, N., Osaka, H., Maegaki, Y., Kato, M., Saito, N., Yamashita, S., Ohno, K. Early onset West syndrome with cerebral hypomyelination and reduced cerebral white matter. Brain Dev. 30: 349-355, 2008. [PubMed: 18065176, related citations] [Full Text]

  10. Xian, J., Parthasarathy, S., Ruggiero, S. M., Balagura, G., Fitch, E., Helbig, K., Gan, J., Ganesan, S., Kaufman, M. C., Ellis, C. A., Lewis-Smith, D., Galer, P., and 42 others. Assessing the landscape of STXBP1-related disorders in 534 individuals. Brain 145: 1668-1683, 2022. [PubMed: 35190816, images, related citations] [Full Text]


Hilary J. Vernon - updated : 11/22/2022
Cassandra L. Kniffin - updated : 4/21/2014
Cassandra L. Kniffin - updated : 1/2/2013
Cassandra L. Kniffin - updated : 10/27/2011
Cassandra L. Kniffin - updated : 6/22/2011
Cassandra L. Kniffin - updated : 7/12/2010
Cassandra L. Kniffin - updated : 11/5/2009
Creation Date:
Cassandra L. Kniffin : 7/10/2008
carol : 11/23/2022
carol : 11/22/2022
carol : 10/15/2020
carol : 10/13/2020
ckniffin : 10/13/2020
carol : 10/09/2020
carol : 10/06/2020
carol : 04/22/2014
mcolton : 4/22/2014
ckniffin : 4/21/2014
carol : 1/10/2013
ckniffin : 1/2/2013
terry : 10/31/2011
carol : 10/28/2011
ckniffin : 10/27/2011
wwang : 6/29/2011
ckniffin : 6/22/2011
carol : 2/11/2011
wwang : 7/13/2010
ckniffin : 7/12/2010
wwang : 11/18/2009
ckniffin : 11/5/2009
alopez : 7/18/2008
alopez : 7/18/2008
ckniffin : 7/10/2008

# 612164

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 4; DEE4


Alternative titles; symbols

EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 4; EIEE4


SNOMEDCT: 768666006;   ORPHA: 1934, 33069, 599373;   DO: 0080436;  


Phenotype-Gene Relationships

Location Phenotype Phenotype
MIM number
Inheritance Phenotype
mapping key
Gene/Locus Gene/Locus
MIM number
9q34.11 Developmental and epileptic encephalopathy 4 612164 Autosomal dominant; Autosomal recessive 3 STXBP1 602926

TEXT

A number sign (#) is used with this entry because of evidence that developmental and epileptic encephalopathy-4 (DEE4) is caused by heterozygous mutation in the STXBP1 gene (602926) on chromosome 9q34. One family has been reported with a homozygous mutation in the STXBP1 gene.


Description

Developmental and epileptic encephalopathy-4 (DEE4) is a neurologic disorder characterized by the onset of tonic seizures in early infancy (usually in first months of life). In most cases, seizures increase in frequency and become refractory. Affected individuals have profoundly impaired psychomotor development with poor head control, limited or no ability to walk, spastic quadriplegia, and poor or absent speech. Brain imaging may show cortical atrophy and hypomyelination. EEG studies in the more severe cases show a burst-suppression pattern, consistent with a clinical diagnosis of Ohtahara syndrome, and/or hypsarrhythmia, consistent with a clinical diagnosis of West syndrome. Less severely affected individuals have later onset of seizures (summary by Saitsu et al., 2008; Hamdan et al., 2009).

For a general phenotypic description and a discussion of genetic heterogeneity of developmental and epileptic encephalopathy, see 308350.


Clinical Features

Saitsu et al. (2008) reported 4 unrelated Japanese patients who presented with tonic seizures between 10 days and 3 months of age. All patients had a burst-suppression pattern on EEG, consistent with a clinical diagnosis of Ohtahara syndrome; several patients showed hypsarrhythmia on EEG, consistent with West syndrome. Three patients continued to have refractory seizures, whereas the patient with onset at 10 days had remission of seizures at 3 months. All 4 patients had severe to profoundly impaired psychomotor development with intellectual disability, poor motor and language skills, and spastic di- or quadriplegia. Brain imaging showed cerebral atrophy and delayed myelination.

Deprez et al. (2010) identified heterozygous truncating mutations in the STXBP1 gene in 6 (5.7%) of 106 patients with various types of early-onset epileptic encephalopathies. Variable seizures first occurred between 3 days and 4.5 months of life, and all patients subsequently had severe to profound mental retardation. Three patients developed hypsarrhythmia by 5 months of age, consistent with a clinical diagnosis of West syndrome. Four patients showed an initial favorable response to vigabatrin and became seizure-free later in childhood even without medication, but 2 had continued seizures despite treatment with antiepileptic medications. None of the patients had a burst-suppression pattern on EEG, as had been observed in the patients reported by Saitsu et al. (2008). Three patients were wheelchair-bound due to hypotonia or dyskinesias. Five patients had proven de novo mutations; parental DNA from the sixth patient was not available. Deprez et al. (2010) emphasized the phenotypic variability in the severity of the epilepsy, but noted that all patients had mental retardation, which suggested that neurodegeneration is an intrinsic property of the disorder.

Clinical Variability

Hamdan et al. (2009) reported 2 unrelated French Canadian patients with developmental delay associated with early-onset seizures. Patient 1 was a 27-year-old woman who developed partial complex seizures at age 6 weeks. Patient 2 was a 15-year-old girl who developed partial complex seizures at 2 years, 9 months of age. Both patients had severely impaired intellectual development, hypotonia, and tremor. Brain imaging in both patients was normal; burst-suppression and hypsarrhythmia were not observed. Hamdan et al. (2009) noted that the phenotypes of these patients were slightly different from that reported by Saitsu et al. (2008), with later onset of seizures and some response to antiepileptic medication.

Carvill et al. (2014) reported 3 unrelated patients with DEE4, who were clinically diagnosed with Dravet syndrome. The patients had onset of seizures between 6 and 12 months of age, which the authors noted was later than other patients with this disorder. Seizure types included tonic-clonic, absence, atonic, myoclonic, focal dyscognitive, and status epilepticus. The seizures were fever-sensitive. Two patients showed developmental regression and had severely impaired intellectual development, whereas the third patient had learning difficulties. EEG in the patients with more severe outcomes showed multifocal discharges, whereas EEG in the patient with mild features was normal. One severely affected patient showed cerebral atrophy on brain MRI, and the other severely affected patient died at age 11 years.

Lammertse et al. (2020) reported 2 female sibs, aged 23 and 26 years, with DEE4. The 23-year-old patient presented from birth with refractory epilepsy, developmental delay, impaired intellectual development, and behavioral abnormalities. The 26-year-old patient was similarly affected but had more moderately impaired intellectual development. The seizure phenotype for both patients was clinically Lennox-Gastaut syndrome.


Inheritance

The heterozygous mutations in the STXBP1 gene that were identified in patients with DEE4 by Saitsu et al. (2008) occurred de novo.

Saitsu et al. (2011) reported a girl with DEE4 who inherited a heterozygous truncating mutation in the STXBP1 gene from her unaffected father, who was somatic mosaic for the mutation. Cloning of PCR products amplified with the paternal DNA samples extracted from his blood, saliva, buccal cells, and nails suggested that 5.3%, 8.7%, 11.9%, and 16.9% of alleles harbored the mutation, respectively. Although sperm was not tested, the father likely carried the mutation in the mosaic state in his germ cells. Saitsu et al. (2011) emphasized the importance of the finding for genetic counseling, as recurrence of the disorder in this family is possible.

Lammertse et al. (2020) reported a family with DEE4 with a homozygous mutation in the STXBP1 gene.


Cytogenetics

In a 29-month-old Japanese girl with early-onset epileptic encephalopathy and cerebral hypomyelination (Tohyama et al., 2008), Saitsu et al. (2008) identified a de novo heterozygous 2.0-Mb microdeletion at chromosome 9q33.3-q34.11 including the STXBP1 gene. Forty other genes mapped within the deletion. Saitsu et al. (2010) later reported that the microdeletion in this patient was 2.25 Mb long and encompassed both the STXBP1 and SPTAN1 (182810) genes. Saitsu et al. (2010) hypothesized that this patient's phenotype was due more to haploinsufficiency of STXBP1, but that haploinsufficiency of SPTAN1 may have had some effect on myelination, because dominant-negative SPTAN1 mutations cause a similar phenotype with hypomyelination and widespread brain atrophy (DEE5; 613477). The patient was originally reported by Tohyama et al. (2008) as presenting with tonic seizures, tremulous arm movements, and oral automatisms at 45 days of age. The pregnancy resulted from in vivo fertilization; her dizygotic twin was unaffected. She continued to have seizures with increased frequency; EEG showed a suppression-burst pattern and hypsarrhythmia, consistent with a clinical diagnosis of West syndrome. She had severely delayed psychomotor development with no language acquisition, inability to sit, spastic quadriplegia, poor visual attention, and poor overall growth with microcephaly (-3.9 SD). Brain MRI showed diffuse hypomyelination, cortical atrophy, and a thin corpus callosum.

Using array CGH, Saitsu et al. (2012) identified 2 different de novo heterozygous deletions involving the STXBP1 gene in 2 (7.1%) of 28 patients with cryptogenic early-onset epileptic encephalopathy. One was a 4.6-kb deletion involving only exon 4 of the STXBP1 gene, and the other was a 2.85-Mb deletion involving 70 genes, including both STXBP1 and SPTAN1. The patient with the smaller deletion developed tonic and myoclonic seizures on day 32 of life. EEG showed a suppression-burst pattern, and brain MRI was normal. Seizure frequency was reduced with high-dose phenobarbital. The patient with the larger deletion had multiple anomalies, including low birth weight, cleft lip and palate, ventricular septal defect, small penis, thin corpus callosum, and small cerebellum. Seizures with suppression-burst pattern on EEG developed around age 1 month. At 19 months, the child showed spastic quadriplegia and profound intellectual disability. Analysis of the breakpoints in both patients suggested that nonhomologous recombination led to the rearrangements.


Molecular Genetics

In 4 unrelated Japanese patients with DEE4, Saitsu et al. (2008) identified heterozygous missense mutations in the STXBP1 gene (602926.0001-602926.0004). The mutations were proven to occur de novo in 3 patients. All mutations occurred in the hydrophobic core of the protein and were predicted to result in destabilization and disruption of protein structure. In vitro studies of the mutant proteins suggested a tendency for aggregation. Saitsu et al. (2008) postulated that the mutations resulted in STXBP1 haploinsufficiency, causing impaired synaptic vesicle release and the DEE phenotype.

In 2 unrelated French Canadian patients with severe mental retardation and epilepsy, Hamdan et al. (2009) identified respective de novo heterozygous truncating mutations in the STXBP1 gene (602926.0005 and 602926.0006). The patients were ascertained from a larger group of 95 patients with idiopathic mental retardation.

In an 11-year-old boy with DEE4, who had a clinical diagnosis of Dravet syndrome but was negative for mutations in the SCN1A gene (182389), Carvill et al. (2014) identified a de novo heterozygous missense mutation in the STXBP1 gene (E283K; 602926.0008). The mutation was found by whole-exome sequencing. Targeted resequencing of 67 patients with a similar disorder identified 2 additional probands with de novo heterozygous missense mutations in the STXBP1 gene. Functional studies of the variants were not performed.

In 2 sibs with DEE4, Lammertse et al. (2020) identified a homozygous missense mutation in the STXBP1 gene (L446F; 602926.0009). The mother and an asymptomatic sib were heterozygous for the mutation; the father was not available for study. Expression of STXBP1 with the L446F mutation in STXBP1-null mouse neurons resulted in shorter dendrites and fewer synapses per dendrite compared to cells expressing wildtype STXBP1. Patch-clamp studies in the mutant cells demonstrated an increased evoked synaptic transmission and impaired recovery after high-frequency stimulation. This appeared to be due to an increased synaptic vesicle response after stimulation with a single action potential. Lammertse et al. (2020) concluded that the L446F mutation leads to a gain-of-function pathogenic mechanism.


Genotype/Phenotype Correlations

In a review of clinical and molecular data from 271 patients with DEE4, Xian et al. (2022) identified 54 recurrent mutations in the STXBP1 gene. Sixteen of the mutations were identified in 5 or more patients, with the most common mutations being R406H (in 20 patients), R406C (in 20 patients), and R292H (in 18 patients). Compared to the entire cohort of patients, those with recurrent mutations did not show an overall phenotypic similarity. However, patients with R406H and R406C mutations were more likely to have a burst suppression pattern on EEG and spastic tetraplegia, and less likely to have ataxia, compared to the rest of the cohort. Additionally, patients with premature termination mutations or deletions in the STXBP1 gene were more likely to have infantile spasms, hypsarrhythmia on EEG, ataxia, hypotonia, and neonatal seizure onset compared to patients with missense mutations.


REFERENCES

  1. Carvill, G. L., Weckhuysen, S., McMahon, J. M., Hartmann, C., Moller, R. S., Hjalgrim, H., Cook, J., Geraghty, E., O'Roak, B. J., Petrou, S., Clarke, A., Gill, D., and 14 others. GABRA1 and STXBP1: novel genetic causes of Dravet syndrome. Neurology 82: 1245-1253, 2014. [PubMed: 24623842] [Full Text: https://doi.org/10.1212/WNL.0000000000000291]

  2. Deprez, L., Weckhuysen, S., Holmgren, P., Suls, A., Van Dyck, T., Goossens, D., Del-Favero, J., Jansen, A., Verhaert, K., Lagae, L., Jordanova, A., Van Coster, R., Yendle, S., Berkovic, S. F., Scheffer, I., Ceulemans, B., De Jonghe, P. Clinical spectrum of early-onset epileptic encephalopathies associated with STXBP1 mutations. Neurology 75: 1159-1165, 2010. [PubMed: 20876469] [Full Text: https://doi.org/10.1212/WNL.0b013e3181f4d7bf]

  3. Hamdan, F. F., Piton, A., Gauthier, J., Lortie, A., Dubeau, F., Dobrzeniecka, S., Spiegelman, D., Noreau, A., Pellerin, S., Cote, M., Henrion, E., Fombonne, E., Mottron, L., Marineau, C., Drapeau, P., Lafreniere, R. G., Lacaille, J. C., Rouleau, G. A., Michaud, J. L. De novo STXBP1 mutations in mental retardation and nonsyndromic epilepsy. Ann. Neurol. 65: 748-753, 2009. [PubMed: 19557857] [Full Text: https://doi.org/10.1002/ana.21625]

  4. Lammertse, H. C. A., van Berkel, A. A., Iacomino, M., Toonen, R. F., Striano, P., Gambardella, A., Verhage, M., Zara, F. Homozygous STXBP1 variant causes encephalopathy and gain-of-function in synaptic transmission. Brain 143: 441-451, 2020. [PubMed: 31855252] [Full Text: https://doi.org/10.1093/brain/awz391]

  5. Saitsu, H., Hoshino, H., Kato, M., Nishiyama, K., Okada, I., Yoneda, Y., Tsurusaki, Y., Doi, H., Miyake, N., Kubota, M., Hayasaka, K., Matsumoto, N. Paternal mosaicism of an STXBP1 mutation in OS. Clin. Genet. 80: 484-488, 2011. [PubMed: 21062273] [Full Text: https://doi.org/10.1111/j.1399-0004.2010.01575.x]

  6. Saitsu, H., Kato, M., Mizuguchi, T., Hamada, K., Osaka, H., Tohyama, J., Uruno, K., Kumada, S., Nishiyama, K., Nishimura, A., Okada, I., Yoshimura, Y., Hirai, S., Kumada, T., Hayasaka, K., Fukuda, A., Ogata, K., Matsumoto, N. De novo mutations in the gene encoding STXBP1 (MUNC18-1) cause early infantile epileptic encephalopathy. Nature Genet. 40: 782-788, 2008. [PubMed: 18469812] [Full Text: https://doi.org/10.1038/ng.150]

  7. Saitsu, H., Kato, M., Shimono, M., Senju, A., Tanabe, S., Kimura, T., Nishiyama, K., Yoneda, Y., Kondo, Y., Tsurusaki, Y., Doi, H., Miyake, N., Hayasaka, K., Matsumoto, N. Association of genomic deletions in the STXBP1 gene with Ohtahara syndrome. (Letter) Clin. Genet. 81: 399-402, 2012. [PubMed: 22211739] [Full Text: https://doi.org/10.1111/j.1399-0004.2011.01733.x]

  8. Saitsu, H., Tohyama, J., Kumada, T., Egawa, K., Hamada, K., Okada, I., Mizuguchi, T., Osaka, H., Miyata, R., Furukawa, T., Haginoya, K., Hoshino, H., and 15 others. Dominant-negative mutations in alpha-II spectrin cause West syndrome with severe cerebral hypomyelination, spastic quadriplegia, and developmental delay. Am. J. Hum. Genet. 86: 881-891, 2010. [PubMed: 20493457] [Full Text: https://doi.org/10.1016/j.ajhg.2010.04.013]

  9. Tohyama, J., Akasaka, N., Osaka, H., Maegaki, Y., Kato, M., Saito, N., Yamashita, S., Ohno, K. Early onset West syndrome with cerebral hypomyelination and reduced cerebral white matter. Brain Dev. 30: 349-355, 2008. [PubMed: 18065176] [Full Text: https://doi.org/10.1016/j.braindev.2007.10.006]

  10. Xian, J., Parthasarathy, S., Ruggiero, S. M., Balagura, G., Fitch, E., Helbig, K., Gan, J., Ganesan, S., Kaufman, M. C., Ellis, C. A., Lewis-Smith, D., Galer, P., and 42 others. Assessing the landscape of STXBP1-related disorders in 534 individuals. Brain 145: 1668-1683, 2022. [PubMed: 35190816] [Full Text: https://doi.org/10.1093/brain/awab327]


Contributors:
Hilary J. Vernon - updated : 11/22/2022
Cassandra L. Kniffin - updated : 4/21/2014
Cassandra L. Kniffin - updated : 1/2/2013
Cassandra L. Kniffin - updated : 10/27/2011
Cassandra L. Kniffin - updated : 6/22/2011
Cassandra L. Kniffin - updated : 7/12/2010
Cassandra L. Kniffin - updated : 11/5/2009

Creation Date:
Cassandra L. Kniffin : 7/10/2008

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