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IFITM3P9 IFITM3 pseudogene 9 [ Homo sapiens (human) ]

Gene ID: 442017, updated on 4-Mar-2025

Summary

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Official Symbol
IFITM3P9provided by HGNC
Official Full Name
IFITM3 pseudogene 9provided by HGNC
Primary source
HGNC:HGNC:54548
See related
AllianceGenome:HGNC:54548
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See IFITM3P9 in Genome Data Viewer
Location:
2p16.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (60682684..60683291, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (60688543..60689150, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (60909819..60910426, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15808 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:60680131-60681128 Neighboring gene BCL11 transcription factor A Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:60703617-60704430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:60708187-60708687 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:60711909-60712410 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:60712411-60712910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:60720541-60721042 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:60721043-60721542 Neighboring gene NANOG hESC enhancer GRCh37_chr2:60724096-60724705 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11510 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15809 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15810 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15811 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15812 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11511 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:60758966-60759525 Neighboring gene VISTA enhancer hs957 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:60776677-60777449 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:60777450-60778222 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11514 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11513 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11515 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15814 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11517 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:60782673-60783281 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15815 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:60809095-60809244 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11518 Neighboring gene VISTA enhancer hs1142 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:60860521-60861233 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11519 Neighboring gene RNA, 7SL, cytoplasmic 361, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15816 Neighboring gene RNA, U6 small nuclear 612, pseudogene Neighboring gene ribosomal protein L26 pseudogene 13

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. Comuzzie AG, et al. PLoS One, 2012. PMID 23251661, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
EBI GWAS Catalog

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • interferon induced transmembrane protein 3 pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_006228.3 

    Range
    101..708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    60682684..60683291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    60688543..60689150 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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