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LOC4343592 ARM REPEAT PROTEIN INTERACTING WITH ABF2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4343592, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4343592
Gene description
ARM REPEAT PROTEIN INTERACTING WITH ABF2
Locus tag
OSNPB_070560300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4343592 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22599626..22602021, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22370278..22372751, complement)

Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene sugar transport protein MST6-like Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene uncharacterized LOC112939662 Neighboring gene uncharacterized LOC9270629

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ARM REPEAT PROTEIN INTERACTING WITH ABF2
Names
Os07g0560300
P0567H04.29
arm repeat containing protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

    Range
    22599626..22602021 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015789846.3 → XP_015645332.1  ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X1

    UniProtKB/TrEMBL
    A0A0P0X7E0, A2YML8, Q6Z3Z9
    Conserved Domains (3) summary
    PLN03200
    Location:260 → 382
    PLN03200; cellulose synthase-interactive protein; Provisional
    COG5064
    Location:324 → 468
    SRP1; Karyopherin (importin) alpha [Intracellular trafficking and secretion]
    sd00043
    Location:322 → 359
    ARM; armadillo repeat [structural motif]

  2. XM_026027152.2 → XP_025882937.1  ARM REPEAT PROTEIN INTERACTING WITH ABF2 isoform X2

    UniProtKB/TrEMBL
    A2YML8
    Conserved Domains (3) summary
    sd00043
    Location:322 → 359
    ARM; armadillo repeat [structural motif]
    cl25709
    Location:324 → 468
    Arm_3; Atypical Arm repeat
    cl27106
    Location:260 → 382
    PLN03200; cellulose synthase-interactive protein; Provisional
Nucleotide Protein
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