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LOC4326337 uncharacterized LOC4326337 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326337, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326337
Gene description
uncharacterized LOC4326337
Locus tag
OSNPB_010566900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4326337 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (22269437..22274646, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21699001..21704205, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene carotenoid cleavage dioxygenase 8 homolog A, chloroplastic-like Neighboring gene transcription factor LATE FLOWERING-like Neighboring gene uncharacterized LOC4326339 Neighboring gene uncharacterized LOC4326341 Neighboring gene sugar transport protein MST8-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5' exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nucleobase-containing compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4326337
Names
Os01g0566900
P0002B05.15
egalitarian-like
exonuclease 3'-5' domain-containing protein 1
piRNA biogenesis protein EXD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    22269437..22274646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015766433.2 → XP_015621919.1  uncharacterized protein LOC4326337

    UniProtKB/TrEMBL
    A0A0P0V4C6, A0A5S6R7J9, A0A979HJE0, A2WRJ3, B7EQ51, Q0JLU9, Q657K3, S4TZU2
    Conserved Domains (2) summary
    cd06148
    Location:14 → 209
    Egl_like_exo; DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins
    pfam00013
    Location:243 → 301
    KH_1; KH domain
Nucleotide Protein
Heading Accession and Version

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