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LOC127897357 OCT4-NANOG hESC enhancer GRCh37_chrX:29243546-29244419 [ Homo sapiens (human) ]

Gene ID: 127897357, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127897357
Gene description
OCT4-NANOG hESC enhancer GRCh37_chrX:29243546-29244419
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive and primed human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Dec 2022]
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Genomic context

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See LOC127897357 in Genome Data Viewer
Location:
chromosome: X
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (29225429..29226302)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (28817498..28818371)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (29243546..29244419)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene interleukin 1 receptor accessory protein like 1 Neighboring gene uncharacterized LOC124900494 Neighboring gene RNA, 5S ribosomal pseudogene 500 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:29173264-29174047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:29194297-29194796 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:29315145-29315868 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:29326788-29327495 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:29327496-29328204 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chrX:29328205-29328911 Neighboring gene NANOG hESC enhancer GRCh37_chrX:29440069-29440570 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20722 Neighboring gene microRNA 4666b Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chrX:29679893-29681092 Neighboring gene NANOG hESC enhancer GRCh37_chrX:29749637-29750178 Neighboring gene uncharacterized LOC124905284

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_148439.1 

    Range
    101..974
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    29225429..29226302
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    28817498..28818371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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