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LOC127891222 H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34011998-34012961 [ Homo sapiens (human) ]

Gene ID: 127891222, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127891222
Gene description
H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34011998-34012961
Gene type
biological region
Feature type(s)
regulatory: enhancer, silencer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay (MPRA) in primed human embryonic stem cells, where it is marked by the H3K27ac and H3K4me1 histone modifications. This locus also includes an accessible chromatin subregion that was validated as a silencer based on its ability to repress an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) MPRA in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
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Genomic context

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See LOC127891222 in Genome Data Viewer
Location:
chromosome: 19
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (33521092..33522055)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (36041847..36042810)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (34011998..34012961)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10497 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33868709-33869402 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33880343-33881245 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33883417-33884181 Neighboring gene CCAAT enhancer binding protein gamma Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33886169-33886998 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33886999-33887828 Neighboring gene uncharacterized LOC124904692 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:33897606-33898163 Neighboring gene peptidase D Neighboring gene ATAC-STARR-seq lymphoblastoid active region 14446 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33909297-33910182 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33976998-33977858 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33977859-33978718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:33978719-33979578 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr19:33994022-33994738 Neighboring gene OCT4-H3K4me1 hESC enhancer GRCh37_chr19:34001184-34001982 Neighboring gene uncharacterized LOC105372370 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34012962-34013924 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34024395-34024912 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34024913-34025429 Neighboring gene uncharacterized LOC100996681 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:34057219-34058051 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:34058052-34058883 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:34073971-34074472 Neighboring gene ribosomal protein L21 pseudogene 131

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. ATAC-STARR-seq reveals transcription factor-bound activators and silencers within chromatin-accessible regions of the human genome. Hansen TJ, et al. Genome Res, 2022 Aug 25. PMID 35858748, Free PMC Article
  2. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • ATAC-STARR-seq lymphoblastoid silent region 10498

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_141100.1 

    Range
    101..1064
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    33521092..33522055
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    36041847..36042810
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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