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LOC127406458 OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:51739951-51740677 [ Homo sapiens (human) ]

Gene ID: 127406458, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127406458
Gene description
OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:51739951-51740677
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors and is marked by the H3K27ac and H3K4me1 histone modifications. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127406458 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (51875153..51875879)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (51739951..51740677)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927082 Neighboring gene uncharacterized LOC124900615 Neighboring gene PKHD1 ciliary IPT domain containing fibrocystin/polyductin Neighboring gene uncharacterized LOC105375087 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:51608450-51608950 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:51608951-51609451 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:51719291-51719815 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:51719816-51720339 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:51739224-51739950 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:51846961-51847687 Neighboring gene RNA, 7SL, cytoplasmic 580, pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:51888848-51890047 Neighboring gene uncharacterized LOC124901327

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_108429.1 

    Range
    101..827
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    51875153..51875879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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