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LOC127404742 NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174120039-174120539 [ Homo sapiens (human) ]

Gene ID: 127404742, updated on 12-Sep-2024

Summary

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Gene symbol
LOC127404742
Gene description
NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174120039-174120539
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the NANOG transcription factor and is marked by the H3K4me1 histone modification. [provided by RefSeq, Oct 2022]
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Genomic context

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See LOC127404742 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (174693036..174693536)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (175234014..175234514)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (174120039..174120539)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105377740 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:174056950-174057177 Neighboring gene HIG1 hypoxia inducible domain family member 1A pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174099129-174099629 Neighboring gene NANOG hESC enhancer GRCh37_chr5:174108078-174108601 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174119538-174120038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174135192-174135692 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174135693-174136193 Neighboring gene NANOG hESC enhancer GRCh37_chr5:174147650-174148179 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174158556-174159119 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:174159120-174159682 Neighboring gene VISTA enhancer hs1256 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr5:174162201-174163131 Neighboring gene msh homeobox 2 Neighboring gene microRNA 4634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_106691.1 

    Range
    101..601
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    174693036..174693536
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    175234014..175234514
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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