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LOC11439388 vacuolar protein sorting-associated protein 28 homolog 1 [ Medicago truncatula (barrel medic) ]

Gene ID: 11439388, updated on 7-Dec-2023

Summary

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Gene symbol
LOC11439388
Gene description
vacuolar protein sorting-associated protein 28 homolog 1
Locus tag
MtrunA17_Chr4g0048111
Gene type
protein coding
RefSeq status
MODEL
Organism
Medicago truncatula
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago
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Genomic context

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See LOC11439388 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
102 current MtrunA17r5.0-ANR (GCF_003473485.1) 4 NC_053045.1 (43889832..43891726)
101 previous assembly MedtrA17_4.0 (GCF_000219495.3) 4 NC_016410.2 (35949940..35951806)

Chromosome 4 - NC_053045.1Genomic Context describing neighboring genes Neighboring gene sugar carrier protein C Neighboring gene endonuclease 4 Neighboring gene bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like Neighboring gene syntaxin-124 Neighboring gene ribosomal RNA-processing protein 17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Dual RNA-Seq analysis of Medicago truncatula and the pea powdery mildew Erysiphe pisi uncovers distinct host transcriptional signatures during incompatible and compatible interactions and pathogen effector candidates. Gupta M, et al. Genomics, 2020 May. PMID 31837401
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-containing complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 28 homolog 1
Names
putative vacuolar protein sorting-associated, VPS28

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Medicago truncatula Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MtrunA17r5.0-ANR Primary Assembly

Genomic

  1. NC_053045.1 Reference MtrunA17r5.0-ANR Primary Assembly

    Range
    43889832..43891726
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003608169.4 → XP_003608217.1  vacuolar protein sorting-associated protein 28 homolog 1

    See identical proteins and their annotated locations for XP_003608217.1

    UniProtKB/TrEMBL
    G7JRS3
    Conserved Domains (1) summary
    pfam03997
    Location:19 → 205
    VPS28; VPS28 protein
Nucleotide Protein
Heading Accession and Version

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