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LOC107987043 uncharacterized LOC107987043 [ Homo sapiens (human) ]

Gene ID: 107987043, updated on 4-Mar-2025

Summary

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Gene symbol
LOC107987043
Gene description
uncharacterized LOC107987043
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107987043 in Genome Data Viewer
Location:
9p24.3-p24.2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (2171885..2242619, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (2172879..2245093, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375951 Neighboring gene uncharacterized LOC105375952 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:1928727-1929926 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28133 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28134 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19728 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:2015793-2016349 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19729 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19730 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19731 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:2018973-2019571 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28135 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:2039759-2040308 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28136 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit ATPase 2 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:2135791-2136058 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:2200432-2201008 Neighboring gene RNA, U2 small nuclear 25, pseudogene Neighboring gene VISTA enhancer hs1743 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:2260567-2261766 Neighboring gene RNA, 7SL, cytoplasmic 592, pseudogene Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2280415-2281039 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2281040-2281664 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:2282916-2283540 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr9:2283541-2284165 Neighboring gene uncharacterized LOC105375955 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr9:2361801-2363000 Neighboring gene uncharacterized LOC101930053 Neighboring gene uncharacterized LOC105375956 Neighboring gene Sharpr-MPRA regulatory region 8982

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    2171885..2242619 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007061395.1 RNA Sequence

  2. XR_001746600.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    2172879..2245093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079864.1 RNA Sequence

  2. XR_007079866.1 RNA Sequence

  3. XR_007079865.1 RNA Sequence

  4. XR_007079867.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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