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LOC107986579 uncharacterized LOC107986579 [ Homo sapiens (human) ]

Gene ID: 107986579, updated on 4-Mar-2025

Summary

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Gene symbol
LOC107986579
Gene description
uncharacterized LOC107986579
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107986579 in Genome Data Viewer
Location:
6p22.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (21537364..21541085, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (21410022..21413743, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene CDKAL1 threonylcarbamoyladenosine tRNA methylthiotransferase Neighboring gene uncharacterized LOC107986578 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:21230452-21231651 Neighboring gene Sharpr-MPRA regulatory region 5810 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:21263602-21264102 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24136 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24137 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24138 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:21275814-21276318 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:21276319-21276823 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21327213-21328056 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21361231-21362046 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:21362047-21362861 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21367138-21367689 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21367690-21368242 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21368243-21368793 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21393485-21394340 Neighboring gene MPRA-validated peak5728 silencer Neighboring gene long intergenic non-protein coding RNA 581 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:21586838-21587370 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16982 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16983 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:21588011-21588668 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24139 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24140 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16984 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16985 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 16986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24141 Neighboring gene bolA family member 2 pseudogene 3 Neighboring gene SRY-box transcription factor 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    21537364..21541085 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001744022.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    21410022..21413743 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007076611.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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