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LOC107277885 vacuolar protein 8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 107277885, updated on 3-Dec-2024

Summary

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Gene symbol
LOC107277885
Gene description
vacuolar protein 8
Locus tag
OSNPB_020160250
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ9003_G05.4
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Genomic context

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See LOC107277885 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3266150..3274063)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3257099..3265601)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328376 Neighboring gene F-box protein At2g39490 Neighboring gene sugar transport protein MST8-like Neighboring gene uncharacterized LOC9267475

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein 8
Names
B1103G11.39
Os02g0160250
armadillo/beta-catenin repeat protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3266150..3274063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307731.1 → XP_066163828.1  vacuolar protein 8 isoform X3

    UniProtKB/TrEMBL
    A2X162

  2. XM_066307729.1 → XP_066163826.1  vacuolar protein 8 isoform X2

    UniProtKB/TrEMBL
    A2X162, A3A3D6

  3. XM_066307728.1 → XP_066163825.1  vacuolar protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A0P0VFC3, Q6H7U7

  4. XM_066307730.1 → XP_066163827.1  vacuolar protein 8 isoform X2

    UniProtKB/TrEMBL
    A2X162, A3A3D6

  5. XM_066307727.1 → XP_066163824.1  vacuolar protein 8 isoform X1

    UniProtKB/TrEMBL
    A0A0P0VFC3, Q6H7U7
Nucleotide Protein
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