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LOC106569413 transcription factor AP-1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106569413, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106569413
Gene description
transcription factor AP-1-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106569413 in Genome Data Viewer
Location:
chromosome: ssa14
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (33705225..33707080)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (33522924..33524782)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene peroxiredoxin-6 Neighboring gene FGGY carbohydrate kinase domain containing Neighboring gene transcriptional adaptor 1 Neighboring gene angiopoietin-related protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor AP-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    33705225..33707080
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014140753.2 → XP_013996228.1  transcription factor AP-1-like

    UniProtKB/TrEMBL
    A0A1S3LZ83
    Conserved Domains (2) summary
    cd14696
    Location:244 → 304
    bZIP_Jun; Basic leucine zipper (bZIP) domain of Jun proteins and similar proteins: a DNA-binding and dimerization domain
    pfam03957
    Location:5 → 231
    Jun; Jun-like transcription factor
Nucleotide Protein
Heading Accession and Version

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