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LOC105378390 uncharacterized LOC105378390 [ Homo sapiens (human) ]

Gene ID: 105378390, updated on 4-Mar-2025

Summary

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Gene symbol
LOC105378390
Gene description
uncharacterized LOC105378390
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105378390 in Genome Data Viewer
Location:
10q23.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (81864263..81865770)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (82738086..82739593)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene OCT4 hESC enhancer GRCh37_chr10:82708488-82708989 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:82788811-82789312 Neighboring gene tryptophanyl tRNA synthetase 2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3672 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:82937375-82938574 Neighboring gene replication protein A2 pseudogene 2 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr10:83203620-83204819 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:83330697-83331635 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:83399505-83399649 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:83488385-83488983 Neighboring gene uncharacterized LOC124902549 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:83635899-83636661 Neighboring gene NANOG hESC enhancer GRCh37_chr10:83641632-83642192 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:83703221-83703801 Neighboring gene MPRA-validated peak1034 silencer Neighboring gene uncharacterized LOC124902472 Neighboring gene neuregulin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    81864263..81865770
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_946135.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    82738086..82739593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007080856.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials