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LOC105376157 uncharacterized LOC105376157 [ Homo sapiens (human) ]

Gene ID: 105376157, updated on 4-Mar-2025

Summary

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Gene symbol
LOC105376157
Gene description
uncharacterized LOC105376157
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC105376157 in Genome Data Viewer
Location:
9q22.32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (95523216..95550472, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (107692874..107720112, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376156 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20065 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98196113-98196685 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98196686-98197257 Neighboring gene metallothionein 1 pseudogene 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98209829-98210813 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98224469-98225332 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98225569-98226070 Neighboring gene uncharacterized LOC100507346 Neighboring gene patched 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98255961-98256702 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr9:98256703-98257442 Neighboring gene VISTA enhancer hs1258 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20067 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20068 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:98269229-98269862 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20069 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20071 Neighboring gene NANOG hESC enhancer GRCh37_chr9:98271448-98271997 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:98272951-98273714 Neighboring gene VISTA enhancer hs1417 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110687 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:98314166-98315130 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr9:98315131-98316095 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98326699-98327200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98327201-98327700 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110694 Neighboring gene uncharacterized LOC105376158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98362911-98363412 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98363413-98363912 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr9:98389397-98390596 Neighboring gene proteasome subunit alpha 7 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    95523216..95550472 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_930139.3 RNA Sequence

  2. XR_930141.3 RNA Sequence

  3. XR_930140.3 RNA Sequence

  4. XR_930138.3 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    107692874..107720112 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007079769.1 RNA Sequence

  2. XR_007079771.1 RNA Sequence

  3. XR_007079768.1 RNA Sequence

  4. XR_007079770.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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