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PCCA-DT PCCA divergent transcript [ Homo sapiens (human) ]

Gene ID: 105370333, updated on 4-Mar-2025

Summary

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Official Symbol
PCCA-DTprovided by HGNC
Official Full Name
PCCA divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:53266
See related
AllianceGenome:HGNC:53266
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in prostate (RPKM 5.0), liver (RPKM 1.9) and 23 other tissues See more
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Genomic context

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See PCCA-DT in Genome Data Viewer
Location:
13q32.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (100086031..100088943, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (99299522..99302434, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (100738285..100741197, complement)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100706176-100706676 Neighboring gene uncharacterized LOC124903200 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:100710682-100711207 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:100732007-100732527 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7958 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7959 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5476 Neighboring gene Sharpr-MPRA regulatory region 14306 Neighboring gene ASNS pseudogene 3 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr13:100781841-100782341 Neighboring gene OCT4-H3K27ac hESC enhancer GRCh37_chr13:100781340-100781840 Neighboring gene propionyl-CoA carboxylase subunit alpha Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr13:100800509-100801160 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:100802588-100803130 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:100803131-100803672 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100811517-100812018 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:100812019-100812518 Neighboring gene ribosomal protein L15 pseudogene 18 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:100849737-100850237 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:100875184-100875695 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:100875696-100876206 Neighboring gene uncharacterized LOC105370335 Neighboring gene Sharpr-MPRA regulatory region 7114

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Insight into hepatocellular carcinogenesis at transcriptome level by comparing gene expression profiles of hepatocellular carcinoma with those of corresponding noncancerous liver. Xu XR, et al. Proc Natl Acad Sci U S A, 2001 Dec 18. PMID 11752456, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132422.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AV692313, BE467176, CX784348

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    100086031..100088943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    99299522..99302434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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