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LOC100289518 immunoglobin superfamily member 21 pseudogene [ Homo sapiens (human) ]

Gene ID: 100289518, updated on 4-Mar-2025

Summary

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Gene symbol
LOC100289518
Gene description
immunoglobin superfamily member 21 pseudogene
See related
Ensembl:ENSG00000254783
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See LOC100289518 in Genome Data Viewer
Location:
11q14.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (86283927..86284671)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (86226326..86227070)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (85994969..85995713)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:85913252-85913752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:85913753-85914253 Neighboring gene farnesyltransferase, CAAX box, alpha pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5373 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:85955248-85955778 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:85955779-85956307 Neighboring gene Sharpr-MPRA regulatory region 11891 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5374 Neighboring gene embryonic ectoderm development Neighboring gene microRNA 6755 Neighboring gene Sharpr-MPRA regulatory region 13347 Neighboring gene SET pseudogene 17 Neighboring gene heat shock protein nuclear import factor hikeshi Neighboring gene RNA, 7SL, cytoplasmic 225, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016208.1 

    Range
    101..845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    86283927..86284671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    86226326..86227070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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