nsv513728
- Organism: Homo sapiens
- Study:nstd50 (Arlt et al. 2011)
- Variant Type:inversion
- Method Type:Sequencing
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:14,438
- Publication(s):Arlt et al. 2011
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 281 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 282 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 42 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 145 SVs from 11 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nsv513728 | Remapped | Good | GRCh38.p12 | Primary Assembly | First Pass | NC_000023.11 | ChrX | 150,402,635 | - | - | 150,417,072 |
| nsv513728 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000023.10 | ChrX | 149,570,904 | - | - | 149,585,346 |
| nsv513728 | Remapped | Good | GRCh37.p13 | PATCHES | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | - | 5,927,484 | 5,941,406 | - |
| nsv513728 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000023.9 | ChrX | 149,321,562 | - | - | 149,336,004 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv626980 | inversion | 1 | Sequencing | Paired-end mapping | 2,637 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Outer Start | Inner Start | Inner Stop | Outer Stop |
|---|---|---|---|---|---|---|---|---|---|---|---|
| nssv626980 | Remapped | Good | NC_000023.11:g.(15 0402635_?)_(?_1504 17072)inv14443 | GRCh38.p12 | First Pass | NC_000023.11 | ChrX | 150,402,635 | - | - | 150,417,072 |
| nssv626980 | Remapped | Good | NW_004070890.2:g.( ?_5927484)_(594140 6_?)inv14443 | GRCh37.p13 | Second Pass | NW_004070890.2 | ChrX|NW_00 4070890.2 | - | 5,927,484 | 5,941,406 | - |
| nssv626980 | Remapped | Perfect | NC_000023.10:g.(14 9570904_?)_(?_1495 85346)inv14443 | GRCh37.p13 | First Pass | NC_000023.10 | ChrX | 149,570,904 | - | - | 149,585,346 |
| nssv626980 | Submitted genomic | NC_000023.9:g.(149 321562_?)_(?_14933 6004)inv14443 | NCBI36 (hg18) | NC_000023.9 | ChrX | 149,321,562 | - | - | 149,336,004 |