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dbVar

Database of genomic structural variation

nsv433532

Organism: Homo sapiens

Study:nstd14 (Cooper et al. 2008)
Variant Type:copy number variation
Method Type:SNP array
Submitted on:NCBI35 (hg17)

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:50,624

Publication(s):Cooper et al. 2008

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 1557 SVs from 81 studies. See in: genome view

Remapped(Score: Good):105,786,368-105,836,991

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nsv433532	Remapped	Good	GRCh38.p12	Primary Assembly	First Pass	NC_000014.9	Chr14	105,786,368	105,836,991
nsv433532	Remapped	Good	GRCh38.p12	ALT_REF_LOCI_1	Second Pass	NT_187600.1	Chr14\|NT_1 87600.1	254,137	304,760
nsv433532	Remapped	Good	GRCh37.p13	Primary Assembly	First Pass	NC_000014.8	Chr14	106,252,705	106,303,325
nsv433532	Remapped	Good	GRCh37.p13	PATCHES	Second Pass	NW_004166863.1	Chr14\|NW_0 04166863.1	449,535	500,158
nsv433532	Submitted genomic		NCBI35 (hg17)	Primary Assembly		NC_000014.7	Chr14	105,322,394	105,374,370

Variant Call Information

Variant Call ID	Type	Sample ID	Method	Analysis	Zygosity	Other Calls in this Sample and Study
nssv463413	copy number loss	NA15510	SNP array	SNP genotyping analysis	Homozygous	42

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Inner Start	Inner Stop
nssv463413	Remapped	Good	NT_187600.1:g.(?_2 54137)_(304760_?)d el	GRCh38.p12	Second Pass	NT_187600.1	Chr14\|NT_1 87600.1	254,137	304,760
nssv463413	Remapped	Good	NC_000014.9:g.(?_1 05786368)_(1058369 91_?)del	GRCh38.p12	First Pass	NC_000014.9	Chr14	105,786,368	105,836,991
nssv463413	Remapped	Good	NW_004166863.1:g.( ?_449535)_(500158_ ?)del	GRCh37.p13	Second Pass	NW_004166863.1	Chr14\|NW_0 04166863.1	449,535	500,158
nssv463413	Remapped	Good	NC_000014.8:g.(?_1 06252705)_(1063033 25_?)del	GRCh37.p13	First Pass	NC_000014.8	Chr14	106,252,705	106,303,325
nssv463413	Submitted genomic		NC_000014.7:g.(?_1 05322394)_(1053743 70_?)del	NCBI35 (hg17)		NC_000014.7	Chr14	105,322,394	105,374,370

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

No genotype data were submitted for this variant

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