Pathogen: clinical or host-associated sample from ... - BioSample - NCBI

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Pathogen: clinical or host-associated sample from Escherichia coli O2:H1

Identifiers: BioSample: SAMN08395902; SRA: SRS2868658; CFSAN: CFSAN049669

Organism: Escherichia coli O2:H1
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli

Package: Pathogen: clinical or host-associated; version 1.0

Attributes

isolate name alias	CFSAN049669,2040
strain	MOD1-EC5423
isolation source	throat rhesus macaque
Interagency Food Safety Analytics Collaboration (IFSAC) category	veterinary clinical/research\| other animal
source type	animal
collection date	2007-08-30
geographic location	USA
host	Rhesus macaque
latitude and longitude	missing
collected by	Pennsylvania State University\| Escherichia coli Reference Center
host disease	missing
food product origin geographic location	USA:MA
project name	GenomeTrakr
sequenced by	Pennsylvania State University\| Escherichia coli Reference Center
attribute_package	clinical/host-associated
ontological term	rhesus macaque:CURATION_0001414\| throat:UBERON_0000341
PublicAccession	CFSAN049669
ProjectAccession	PRJNA230969
Species	coli
Genus	Escherichia

BioProject: PRJNA230969 Escherichia
Retrieve all samples from this project

Submission: FDA Center for Food Safety and Applied Nutrition, Edward Dudley; 2018-01-25

Accession:: SAMN08395902
ID:: 8395902

BioProject SRA Nucleotide

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Pathogen: clinical or host-associated sample from Escherichia coli O2:H1
Pathogen: clinical or host-associated sample from Escherichia coli O2:H1

biosample
Escherichia coli O2:H1 strain MOD1-EC5423, whole genome shotgun sequencing proje...
Escherichia coli O2:H1 strain MOD1-EC5423, whole genome shotgun sequencing project
gi|1829650031|gb|AASCBW000000000.1| W010000000

Nucleotide
Pathogen: clinical or host-associated sample from Escherichia coli O88:H4
Pathogen: clinical or host-associated sample from Escherichia coli O88:H4

biosample
Escherichia coli O88:H4 strain MOD1-EC5424, whole genome shotgun sequencing proj...
Escherichia coli O88:H4 strain MOD1-EC5424, whole genome shotgun sequencing project
gi|1829650039|gb|AASCCD000000000.1| D010000000

Nucleotide
Pathogen: environmental/food/other sample from Escherichia coli O74
Pathogen: environmental/food/other sample from Escherichia coli O74

biosample

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