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Definitions for CSeqportUtil

Type	Member of	File	Line
class		/include/objects/seq/seqport_util.hpp	51

1 declarations in 1 files.

References to CSeqportUtil

File	Line
/include/objects/seq/seqport_util.hpp	51
/src/algo/blast/api/blast_aux.cpp	605
/src/algo/blast/api/msa_pssm_input.cpp	157
/src/algo/blast/format/blastfmtutil.cpp	409
/src/algo/blast/unit_tests/api/pssmcreate_unit_test.cpp	428 445
/src/algo/blast/unit_tests/api/querydata_unit_test.cpp	432 455
/src/algo/seqqa/single_aln_tests.cpp	617 621
/src/algo/seqqa/xcript_tests.cpp	991
/src/algo/sequence/gene_model.cpp	1204 1354
/src/algo/sequence/orf.cpp	277
/src/algo/sequence/util.cpp	113
/src/algo/winmask/demo/win_mask_app.cpp	329
/src/algo/winmask/win_mask_gen_counts.cpp	94
/src/app/nmer_repeats/nmer_repeats.cpp	145
/src/gui/objutils/utils.cpp	640
/src/gui/packages/pkg_sequence_edit/update_seq.cpp	812 1003
/src/gui/packages/pkg_sequence_edit/update_seq_input.cpp	526 646
/src/gui/widgets/aln_multiple/alnmulti_renderer.cpp	419 419 421 432 432 434
/src/gui/widgets/edit/vectortrimpanel.cpp	616
/src/misc/discrepancy/discrepancy_context.cpp	380
/src/misc/discrepancy/feature_tests.cpp	2228
/src/misc/hgvs/hgvs_parser.cpp	912 1955 1964 1972
/src/misc/hgvs/hgvs_parser2.cpp	1208 1210 1213 1254
/src/misc/hgvs/hgvs_writer2.cpp	261 441 463
/src/misc/hgvs/variation_util.cpp	698 820
/src/misc/hgvs/variation_util2.cpp	1519 1711 1732 1737 2078 2174
/src/objects/scoremat/Pssm.cpp	90
/src/objects/seq/Delta_ext.cpp	105
/src/objects/seq/seqport_util.cpp	95 106 107 904 917 931 945 954 964 975 988 1000 1010 1025 1035 1046 1056 1067 1077 1088 1093 1098 1103 1103 1109 1109 1115 1122 1129 1136 1143 1143 1150 1150 1157 1157 1164 1164 1171 1171 1179 1179 5817 5825 5841 5861 5865 5873 5881 5889 5895 5902 5912 5919 5925 5932 5942 5989 5994
/src/objects/seq/test/test_seqport.cpp	290 298 302 313 324 335 345 355 362 369 376 377 385 386 397 407 420 433 839 898 942 943 944 976 978 1003 1030 1032 1058 1085 1086 1113 1142 1166 1199 1224 1227 1250 1252
/src/objmgr/seq_vector.cpp	1137 1138 1146 1155 1172 1180 1198 1201
/src/objmgr/test/test_helper.cpp	618
/src/objmgr/util/feature.cpp	337 340 344 352 355 359 367 372 386
/src/objmgr/util/objutil.cpp	1563
/src/objmgr/util/sequence.cpp	5146 5162
/src/objmgr/util/unit_test/unit_test_fasta_ostream.cpp	696 706
/src/objtools/edit/seq_edit.cpp	57
/src/objtools/edit/seq_entry_edit.cpp	2485
/src/objtools/flatfile/asci_blk.cpp	1743 1743 1744 1745 1766 1766 1767 1768 1797 1797 1798 1799 1820 1820 1821 1822 2785 2795
/src/objtools/format/feature_item.cpp	3366
/src/objtools/readers/aln_reader.cpp	716
/src/objtools/readers/fasta.cpp	1378 1446
/src/objtools/readers/phrap.cpp	337 340
/src/objtools/validator/single_feat_validator.cpp	3467
/src/objtools/validator/unit_test/unit_test_validator.cpp	15607 15621
/src/objtools/validator/validerror_bioseq.cpp	3136 4497 10578 10596
/src/objtools/writers/write_util.cpp	249

208 references in 47 files.