Crystal structure of Escherichia coli glucose-1-phosphate thymidylyltransferase (RffH) complexed with dTTP and Mg2+
- PMID: 12171937
- DOI: 10.1074/jbc.M206932200
Crystal structure of Escherichia coli glucose-1-phosphate thymidylyltransferase (RffH) complexed with dTTP and Mg2+
Abstract
The enzyme glucose-1-phosphate thymidylyltransferase (RffH), the product of the rffh gene, catalyzes one of the steps in the synthesis of enterobacterial common antigen (ECA), a cell surface glycolipid found in Gram-negative enteric bacteria. In Escherichia coli two gene products, RffH and RmlA, catalyze the same enzymatic reaction and are homologous in sequence; however, they are part of different operons and function in different pathways. We report the crystal structure of RffH bound to deoxythymidine triphosphate (dTTP), the phosphate donor, and Mg(2+), refined at 2.6 A to an R-factor of 22.3% (R(free) = 28.4%). The crystal structure of RffH shows a tetrameric enzyme best described as a dimer of dimers. Each monomer has an overall alpha/beta fold and consists of two domains, a larger nucleotide binding domain (residues 1-115, 222-291) and a smaller sugar-binding domain (116-221), with the active site located at the domain interface. The Mg(2+) ion is coordinated by two conserved aspartates and the alpha-phosphate of deoxythymidine triphosphate. Its location corresponds well to that in a structurally similar domain of N-acetylglucosamine-1-phosphate uridylyltransferase (GlmU). Analysis of the RffH, RmlA, and GlmU complexes with substrates and products provides an explanation for their different affinities for Mg(2+) and leads to a proposal for the dynamics along the reaction pathway.
Similar articles
-
The structure of glucose-1-phosphate thymidylyltransferase from Mycobacterium tuberculosis reveals the location of an essential magnesium ion in the RmlA-type enzymes.Protein Sci. 2018 Feb;27(2):441-450. doi: 10.1002/pro.3333. Epub 2017 Nov 9. Protein Sci. 2018. PMID: 29076563 Free PMC article.
-
Kinetic and crystallographic analyses support a sequential-ordered bi bi catalytic mechanism for Escherichia coli glucose-1-phosphate thymidylyltransferase.J Mol Biol. 2001 Nov 2;313(4):831-43. doi: 10.1006/jmbi.2001.5073. J Mol Biol. 2001. PMID: 11697907
-
The structural basis of the catalytic mechanism and regulation of glucose-1-phosphate thymidylyltransferase (RmlA).EMBO J. 2000 Dec 15;19(24):6652-63. doi: 10.1093/emboj/19.24.6652. EMBO J. 2000. PMID: 11118200 Free PMC article.
-
Crystal structures of Streptococcus pneumoniae N-acetylglucosamine-1-phosphate uridyltransferase, GlmU, in apo form at 2.33 A resolution and in complex with UDP-N-acetylglucosamine and Mg(2+) at 1.96 A resolution.J Mol Biol. 2001 Jan 12;305(2):279-89. doi: 10.1006/jmbi.2000.4296. J Mol Biol. 2001. PMID: 11124906
-
Crystal structure of Escherichia coli PdxA, an enzyme involved in the pyridoxal phosphate biosynthesis pathway.J Biol Chem. 2003 Oct 31;278(44):43682-90. doi: 10.1074/jbc.M306344200. Epub 2003 Aug 1. J Biol Chem. 2003. PMID: 12896974
Cited by
-
Exopolysaccharide defects cause hyper-thymineless death in Escherichia coli via massive loss of chromosomal DNA and cell lysis.Proc Natl Acad Sci U S A. 2020 Dec 29;117(52):33549-33560. doi: 10.1073/pnas.2012254117. Epub 2020 Dec 14. Proc Natl Acad Sci U S A. 2020. PMID: 33318216 Free PMC article.
-
Insights into glycogen metabolism in chemolithoautotrophic bacteria from distinctive kinetic and regulatory properties of ADP-glucose pyrophosphorylase from Nitrosomonas europaea.J Bacteriol. 2012 Nov;194(22):6056-65. doi: 10.1128/JB.00810-12. Epub 2012 Sep 7. J Bacteriol. 2012. PMID: 22961847 Free PMC article.
-
GMPPA defects cause a neuromuscular disorder with α-dystroglycan hyperglycosylation.J Clin Invest. 2021 May 3;131(9):e139076. doi: 10.1172/JCI139076. J Clin Invest. 2021. PMID: 33755596 Free PMC article.
-
Conserved residues of the Pro103-Arg115 loop are involved in triggering the allosteric response of the Escherichia coli ADP-glucose pyrophosphorylase.Protein Sci. 2015 May;24(5):714-28. doi: 10.1002/pro.2644. Epub 2015 Mar 12. Protein Sci. 2015. PMID: 25620658 Free PMC article.
-
Characterization of substrate binding and catalysis in the potential antibacterial target N-acetylglucosamine-1-phosphate uridyltransferase (GlmU).Protein Sci. 2007 Dec;16(12):2657-66. doi: 10.1110/ps.073135107. Protein Sci. 2007. PMID: 18029420 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases