X-ray structure of the Escherichia coli periplasmic 5'-nucleotidase containing a dimetal catalytic site
- PMID: 10331872
- DOI: 10.1038/8253
X-ray structure of the Escherichia coli periplasmic 5'-nucleotidase containing a dimetal catalytic site
Abstract
The crystal structure of 5'-nucleotidase (5'-NT) from E. coli, also known as UDP-sugar hydrolase, has been determined at 1.7 A resolution. Two zinc ions are present in the active site, which is located in a cleft between two domains. The dimetal center and a catalytic Asp-His dyad are the main players in the catalytic mechanism. Structure-based sequence comparisons show that the structure also provides a model for animal 5'-NTs, which together with other ectonucleotidases terminate the action of nucleotides as extracellular signaling substances in the nervous system.
Similar articles
-
Mechanism of hydrolysis of phosphate esters by the dimetal center of 5'-nucleotidase based on crystal structures.J Mol Biol. 2001 May 25;309(1):239-54. doi: 10.1006/jmbi.2001.4656. J Mol Biol. 2001. PMID: 11491293
-
E. coli 5'-nucleotidase undergoes a hinge-bending domain rotation resembling a ball-and-socket motion.J Mol Biol. 2001 May 25;309(1):255-66. doi: 10.1006/jmbi.2001.4657. J Mol Biol. 2001. PMID: 11491294
-
Cobalt activation of Escherichia coli 5'-nucleotidase is due to zinc ion displacement at only one of two metal-ion-binding sites.Biochem J. 2003 Jun 1;372(Pt 2):625-30. doi: 10.1042/BJ20021800. Biochem J. 2003. PMID: 12603203 Free PMC article.
-
The histidine phosphatase superfamily: structure and function.Biochem J. 2008 Jan 15;409(2):333-48. doi: 10.1042/BJ20071097. Biochem J. 2008. PMID: 18092946 Review.
-
New insights into molecular structure and function of ectonucleotidases in the nervous system.Neurochem Int. 1998 May-Jun;32(5-6):421-5. doi: 10.1016/s0197-0186(97)00126-5. Neurochem Int. 1998. PMID: 9676740 Review.
Cited by
-
A model of the acid sphingomyelinase phosphoesterase domain based on its remote structural homolog purple acid phosphatase.Protein Sci. 2004 Dec;13(12):3172-86. doi: 10.1110/ps.04966204. Protein Sci. 2004. PMID: 15557261 Free PMC article.
-
Crystal structure of Homo sapiens PTD012 reveals a zinc-containing hydrolase fold.Protein Sci. 2006 Apr;15(4):914-20. doi: 10.1110/ps.052037006. Epub 2006 Mar 7. Protein Sci. 2006. PMID: 16522806 Free PMC article.
-
Extracellular nucleotide catabolism by the Group B Streptococcus ectonucleotidase NudP increases bacterial survival in blood.J Biol Chem. 2014 Feb 28;289(9):5479-89. doi: 10.1074/jbc.M113.545632. Epub 2014 Jan 15. J Biol Chem. 2014. PMID: 24429288 Free PMC article.
-
Substrate-promoted formation of a catalytically competent binuclear center and regulation of reactivity in a glycerophosphodiesterase from Enterobacter aerogenes.J Am Chem Soc. 2008 Oct 29;130(43):14129-38. doi: 10.1021/ja803346w. Epub 2008 Oct 3. J Am Chem Soc. 2008. PMID: 18831553 Free PMC article.
-
Streptococcus suis 5'-nucleotidases contribute to adenosine-mediated immune evasion and virulence in a mouse model.Virulence. 2024 Dec;15(1):2401963. doi: 10.1080/21505594.2024.2401963. Epub 2024 Sep 16. Virulence. 2024. PMID: 39282964 Free PMC article.
Publication types
MeSH terms
Substances
Associated data
- Actions
- Actions
LinkOut - more resources
Other Literature Sources
Molecular Biology Databases
Research Materials