{"id":12355,"date":"2023-10-24T12:07:24","date_gmt":"2023-10-24T16:07:24","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=12355"},"modified":"2023-10-24T15:33:52","modified_gmt":"2023-10-24T19:33:52","slug":"new-annotations-in-refseq-2","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/","title":{"rendered":"New Annotations in RefSeq!"},"content":{"rendered":"<p>In July, August, and September, the\u00a0<a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/annotation_euk\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-update-20231024\" target=\"_blank\" rel=\"nofollow noopener\">NCBI Eukaryotic Genome Annotation Pipeline<\/a>\u00a0released <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/?accession=GCF_030625045.1%2CGCF_902713425.1%2CGCF_028640845.1%2CGCF_030867095.1%2CGCF_027887145.1%2CGCF_027579445.1%2CGCF_943735745.2%2CGCF_943734705.1%2CGCF_943734765.1%2CGCF_014773155.1%2CGCF_963082965.1%2CGCF_030273125.1%2CGCF_030987335.1%2CGCF_901000735.1%2CGCF_030265065.1%2CGCF_030272615.1%2CGCF_022539665.2%2CGCF_030445035.1%2CGCF_020826845.1%2CGCF_026250575.1%2CGCF_030265055.1%2CGCF_030936135.1%2CGCF_019097595.1%2CGCF_030052815.1%2CGCF_015227805.2%2CGCF_009828535.3%2CGCF_026419965.1%2CGCF_029784015.1%2CGCF_029962835.1%2CGCF_029873635.1%2CGCF_030247185.1%2CGCF_021218885.2%2CGCF_028018845.1%2CGCF_030504385.1%2CGCF_030435805.1%2CGCF_022355385.1%2CGCF_963259705.1%2CGCF_031216515.1%2CGCF_028018385.1%2CGCF_030435755.1%2CGCF_012432095.1%2CGCF_949786415.1%2CGCF_947086385.1%2CGCF_024137745.1%2CGCF_028476545.1%2CGCF_030620025.1%2CGCF_030490865.1%2CGCF_030253575.1%2CGCF_028751815.1%2CGCF_958295425.1%2CGCF_030684315.1%2CGCF_963082655.1%2CGCF_007210705.1%2CGCF_030247195.1%2CGCF_029867415.1%2CGCF_030704535.1&amp;utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-update-20231024\">fifty-six new annotations<\/a> in\u00a0<a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/refseq\/about\/\" target=\"_blank\" rel=\"nofollow noopener\">RefSeq<\/a>!<\/p>\n<h5>New Annotations<\/h5>\n<ul>\n<li><span style=\"font-size: 17px;\">Achroia grisella (moth)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Acipenser ruthenus (sterlet)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Ahaetulla prasina (snake)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Alligator mississippiensis (American alligator)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Ammospiza caudacuta (bird)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Ammospiza nelsoni (bird)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Anopheles bellator (mosquito)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Anopheles coustani (mosquito)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Anopheles ziemanni (mosquito)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Arachis stenosperma (eudicot)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Carassius carassius (crucian carp)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Centropristis striata (black seabass)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Cornus florida (flowering dogwood) <em>(pictured)<\/em><\/span><\/li>\n<li><span style=\"font-size: 17px;\">Corylus avellana (European hazelnut)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Corythoichthys intestinalis (scribbled pipefish) <!--more--><\/span><\/li>\n<li><span style=\"font-size: 17px;\">Cryptomeria japonica (Japanese cedar)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Daphnia carinata (crustacean)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Dasypus novemcinctus (nine-banded armadillo)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Diceros bicornis minor (black rhinoceros)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Diorhabda carinulata (beetle)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Doryrhamphus excisus (bluestripe pipefish)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Gavia stellata (red-throated loon)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Hemibagrus wyckioides (bony fish)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Hevea brasiliensis (rubber tree)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Hirundo rustica (Barn swallow)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Hylobates moloch (silvery gibbon)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Kogia breviceps (pygmy sperm whale)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Lycium ferocissimum (eudicot)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Magnolia sinica (flowering plant)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Malania oleifera (eudicot)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Malaya genurostris (mosquito)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Marmota monax (woodchuck)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Melospiza georgiana (bird)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Musca domestica (house fly)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Mustela lutreola (European mink)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Mustela nigripes (black-footed ferret)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Myotis daubentonii (Daubenton&#8217;s bat)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Neocloeon triangulifer (mayfly)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Neofelis nebulosa (Clouded leopard)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Ochotona princeps (American pika)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Onychostoma macrolepis (bony fish)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Peromyscus eremicus (cactus mouse)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Phlebotomus argentipes (fly)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Phymastichus coffea (wasps, ants &amp; bees)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Physella acuta (gastropod)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Pocillopora verrucosa (stony corals)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Poecile atricapillus (Black-capped chickadee)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Rhododendron vialii (eudicot)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Salvia miltiorrhiza (eudicot)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Solea solea (common sole)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Stegostoma tigrinum (sharks &amp; rays)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Stomoxys calcitrans (stable fly)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Tigriopus californicus (tidepool copepod)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Topomyia yanbarensis (mosquito)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Vicia villosa (hairy vetch)<\/span><\/li>\n<li><span style=\"font-size: 17px;\">Vitis vinifera (wine grape)<\/span><\/li>\n<\/ul>\n<p>View the full list of annotated eukaryotes available in the <a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/gdv\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-update-20231024\" target=\"_blank\" rel=\"nofollow noopener\">GDV genome browser<\/a>. You can download genome sequence and metadata using the <a class=\"external-link\" title=\"Follow link\" href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/docs\/v2\/how-tos\/genomes\/download-genome\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-update-20231024\" target=\"_blank\" rel=\"nofollow noopener\">NCBI Datasets command line tool<\/a>.<\/p>\n<h5>Stay up to date<\/h5>\n<p>RefSeq is part of the\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/comparative-genomics-resource\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-update-20231024\">NIH Comparative Genomics Resource (CGR)<\/a>. <span data-contrast=\"none\">CGR facilitates reliable comparative genomics analyses\u202ffor all eukaryotic organisms through an NCBI Toolkit and community collaboration.\u202f\u202f\u202f<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true,&quot;201341983&quot;:0,&quot;335559739&quot;:160,&quot;335559740&quot;:240}\">\u00a0<\/span><\/p>\n<p>CGR is also making it easier to navigate between data and tools. To see this list and find out what\u2019s in the RefSeq annotation pipeline, check out the\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-update-20230724\">new table<\/a>\u00a0in NCBI Datasets with information on the latest eukaryotic RefSeq annotations.<\/p>\n<p><a class=\"external-link\" href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_50%22\" rel=\"nofollow\">Join our mailing list<\/a>\u00a0to keep up to date with RefSeq and other CGR news.<\/p>\n<h5>Questions?<\/h5>\n<p><span data-ccp-props=\"{&quot;201341983&quot;:0,&quot;335559739&quot;:0,&quot;335559740&quot;:240}\">If you have questions or would like to provide feedback, please\u202f<a href=\"https:\/\/support.nlm.nih.gov\/support\/create-case\/\">write to our help desk<\/a>.\u202f\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>In July, August, and September, the\u00a0NCBI Eukaryotic Genome Annotation Pipeline\u00a0released fifty-six new annotations in\u00a0RefSeq! New Annotations Achroia grisella (moth) Acipenser ruthenus (sterlet) Ahaetulla prasina (snake) Alligator mississippiensis (American alligator) Ammospiza caudacuta (bird) Ammospiza nelsoni (bird) Anopheles bellator (mosquito) Anopheles coustani (mosquito) Anopheles ziemanni (mosquito) Arachis stenosperma (eudicot) Carassius carassius (crucian carp) Centropristis striata (black seabass) &hellip; <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">New Annotations in RefSeq!<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":12360,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"New Annotations in RefSeq!","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[693060768,574294629,574293891,693060836,27739816],"table_tags":[],"class_list":["post-12355","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-comparative-genomics-resource-cgr","tag-eukaryotic-genome-annotation","tag-genome-data-viewer","tag-ncbi-datasets","tag-refseq"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>New Annotations in RefSeq! - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"New Annotations in RefSeq! - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"In July, August, and September, the\u00a0NCBI Eukaryotic Genome Annotation Pipeline\u00a0released fifty-six new annotations in\u00a0RefSeq! New Annotations Achroia grisella (moth) Acipenser ruthenus (sterlet) Ahaetulla prasina (snake) Alligator mississippiensis (American alligator) Ammospiza caudacuta (bird) Ammospiza nelsoni (bird) Anopheles bellator (mosquito) Anopheles coustani (mosquito) Anopheles ziemanni (mosquito) Arachis stenosperma (eudicot) Carassius carassius (crucian carp) Centropristis striata (black seabass) &hellip; Continue reading New Annotations in RefSeq! &rarr;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\" \/>\n<meta property=\"og:site_name\" content=\"NCBI Insights\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/ncbi.nlm\" \/>\n<meta property=\"article:published_time\" content=\"2023-10-24T16:07:24+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2023-10-24T19:33:52+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/iStock-1398221247-e1698162027143.jpg\" \/>\n\t<meta property=\"og:image:width\" content=\"1100\" \/>\n\t<meta property=\"og:image:height\" content=\"733\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/jpeg\" \/>\n<meta name=\"author\" content=\"NCBI Staff\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@NCBI\" \/>\n<meta name=\"twitter:site\" content=\"@NCBI\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"NCBI Staff\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\"},\"author\":{\"name\":\"NCBI Staff\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#\/schema\/person\/4f41ea6a31cea38a9a1b1419c048e50b\"},\"headline\":\"New Annotations in RefSeq!\",\"datePublished\":\"2023-10-24T16:07:24+00:00\",\"dateModified\":\"2023-10-24T19:33:52+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\"},\"wordCount\":364,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#organization\"},\"image\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/iStock-1398221247-e1698162027143.jpg?fit=1100%2C733&ssl=1\",\"keywords\":[\"Comparative Genomics Resource (CGR)\",\"Eukaryotic genome annotation\",\"Genome Data Viewer (GDV)\",\"NCBI Datasets\",\"RefSeq\"],\"articleSection\":[\"What's New\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\",\"url\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/\",\"name\":\"New Annotations in RefSeq! 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- NCBI Insights","robots":{"index":"index","follow":"follow","max-snippet":"max-snippet:-1","max-image-preview":"max-image-preview:large","max-video-preview":"max-video-preview:-1"},"canonical":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/24\/new-annotations-in-refseq-2\/","og_locale":"en_US","og_type":"article","og_title":"New Annotations in RefSeq! - NCBI Insights","og_description":"In July, August, and September, the\u00a0NCBI Eukaryotic Genome Annotation Pipeline\u00a0released fifty-six new annotations in\u00a0RefSeq! 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