{"id":12325,"date":"2023-10-19T09:38:56","date_gmt":"2023-10-19T13:38:56","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=12325"},"modified":"2024-04-05T15:15:22","modified_gmt":"2024-04-05T19:15:22","slug":"changes-virus-data-resources-ncbi","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/","title":{"rendered":"Upcoming Changes to Virus Data Resources at NCBI"},"content":{"rendered":"<h3><i><span data-contrast=\"auto\">Effective June 2024, NCBI Virus will replace legacy virus web resources<\/span><\/i><span data-ccp-props=\"{}\">\u00a0<\/span><\/h3>\n<p><span data-contrast=\"auto\">Coming soon! As part of our <\/span><a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/18\/ncbi-datasets-access-sequence-data\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019\"><span data-contrast=\"none\">ongoing effort<\/span><\/a><span data-contrast=\"auto\"> to enhance your experience and modernize our services, several of our legacy virus-related web resources will be replaced by <\/span><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/labs\/virus\/vssi\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019#\/\"><span data-contrast=\"none\">NCBI Virus<\/span><\/a> <span data-contrast=\"auto\">&#8211; our community portal for viral sequence data. NCBI Virus is more comprehensive, modernized, and has more powerful features and analysis tools than our legacy resources.<\/span><span data-ccp-props=\"{}\">\u00a0<\/span><span data-ccp-props=\"{}\">\u00a0<\/span><\/p>\n<h5>What will change?<\/h5>\n<p><span data-contrast=\"auto\">Below is a list of the legacy virus resources that will be replaced by NCBI Virus. <\/span><span data-contrast=\"auto\">The list includes a description of features that will continue to be supported through NCBI Virus:<\/span><span data-ccp-props=\"{}\">\u00a0<\/span><!--more--><\/p>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/viruses\/variation\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019\">Virus Variation Resource<\/a>:<\/span><span data-ccp-props=\"{}\">\u00a0<\/span>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">NCBI Virus supports retrieval of RefSeq, nucleotide, and protein sequences for rotavirus, dengue viruses, west Nile virus, ebolavirus, Zika virus, and MERS coronavirus. Filters to select relevant datasets, analysis tools such as the Multiple Sequence Alignment Viewer (MSAV) and downloading data in several formats continues to be available through NCBI Virus. <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/labs\/virus\/vssi\/docs\/help\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019\">Get further details<\/a> on how to use these features in NCBI Virus.\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">For Rotavirus, we plan to restore standardized segment names and grouped genomes in NCBI Virus in the future.\u00a0\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><strong>NOTE<\/strong>: The redirects that are planned for completion by June 2024 will NOT impact the <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genomes\/FLU\/Database\/nph-select.cgi?go=database&amp;utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019\">Influenza Virus Resource<\/a> in any way. The Influenza Virus Resource will continue to be available, serving up data to support our Flu-research community.<\/span><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genomes\/GenomesGroup.cgi?taxid=10239&amp;utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019\">Viral Genomes Browser<\/a>:\u00a0<\/span>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">NCBI Virus supports taxonomy-based filtering for RefSeq, nucleotide, and protein sequences, as well as quality metrics to help you find complete genomes. Filters for specific hosts or host taxonomy, molecular genome composition, and several other characteristics are also available.\u00a0\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"25\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">NCBI Virus also supports curated segment names for RefSeq. We plan to provide standardized segment names and grouped genomes for GenBank sequences in NCBI Virus in the future.\u00a0\u00a0\u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"26\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\"><a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/viruses\/retroviruses\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=ncbi-virus-replace-legacy-20221019\">Retroviruses<\/a>:\u00a0<\/span>\n<ul>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"26\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">The HIV-1 Human Interaction Database will no longer be supported.\u00a0\u00a0<\/span><\/li>\n<li data-leveltext=\"\uf0b7\" data-font=\"Symbol\" data-listid=\"26\" data-list-defn-props=\"{&quot;335552541&quot;:1,&quot;335559684&quot;:-2,&quot;335559685&quot;:720,&quot;335559991&quot;:360,&quot;469769226&quot;:&quot;Symbol&quot;,&quot;469769242&quot;:[8226],&quot;469777803&quot;:&quot;left&quot;,&quot;469777804&quot;:&quot;\uf0b7&quot;,&quot;469777815&quot;:&quot;hybridMultilevel&quot;}\" aria-setsize=\"-1\" data-aria-posinset=\"1\" data-aria-level=\"1\"><span style=\"font-size: 17px;\">Retrovirus RefSeq and GenBank data is currently available through NCBI Virus. \u00a0<\/span><\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<h5 aria-level=\"5\">Stay up to date<\/h5>\n<p><span data-contrast=\"none\">Follow us on social\u202f<\/span><a href=\"https:\/\/twitter.com\/ncbi\"><span data-contrast=\"none\">@NCBI<\/span><\/a><span data-contrast=\"none\">\u202fand\u202f<\/span><a href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_52\"><span data-contrast=\"none\">join our mailing list<\/span><\/a><span data-contrast=\"none\">\u202fto\u202fkeep up to date with NCBI Virus and other NCBI news.\u202f\u202f\u202f<\/span><span data-ccp-props=\"{&quot;134233117&quot;:true,&quot;134233118&quot;:true}\">\u00a0<\/span><\/p>\n<h5 aria-level=\"5\">Questions?<\/h5>\n<p><span data-contrast=\"auto\">We appreciate your support of our virus resources. Thank you for your patience as we make this transition. <\/span><span data-contrast=\"none\">If you have questions or would like to provide feedback, please\u202f<\/span><a href=\"https:\/\/support.nlm.nih.gov\/support\/create-case\/\"><span data-contrast=\"none\">write to our help desk<\/span><\/a><span data-contrast=\"none\">.\u202f<\/span><span data-ccp-props=\"{}\">\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Effective June 2024, NCBI Virus will replace legacy virus web resources\u00a0 Coming soon! As part of our ongoing effort to enhance your experience and modernize our services, several of our legacy virus-related web resources will be replaced by NCBI Virus &#8211; our community portal for viral sequence data. NCBI Virus is more comprehensive, modernized, and &hellip; <a href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\" class=\"more-link\">Continue reading <span class=\"screen-reader-text\">Upcoming Changes to Virus Data Resources at NCBI<\/span> <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":42204617,"featured_media":12327,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"Upcoming Changes to Virus Data Resources at NCBI","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[1201719,556890977,693060764,27739816],"table_tags":[],"class_list":["post-12325","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-genbank","tag-multiple-sequence-alignment-viewer","tag-ncbi-virus","tag-refseq"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>Upcoming Changes to Virus Data Resources at NCBI - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Upcoming Changes to Virus Data Resources at NCBI - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"Effective June 2024, NCBI Virus will replace legacy virus web resources\u00a0 Coming soon! As part of our ongoing effort to enhance your experience and modernize our services, several of our legacy virus-related web resources will be replaced by NCBI Virus &#8211; our community portal for viral sequence data. NCBI Virus is more comprehensive, modernized, and &hellip; Continue reading Upcoming Changes to Virus Data Resources at NCBI &rarr;\" \/>\n<meta property=\"og:url\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\" \/>\n<meta property=\"og:site_name\" content=\"NCBI Insights\" \/>\n<meta property=\"article:publisher\" content=\"https:\/\/www.facebook.com\/ncbi.nlm\" \/>\n<meta property=\"article:published_time\" content=\"2023-10-19T13:38:56+00:00\" \/>\n<meta property=\"article:modified_time\" content=\"2024-04-05T19:15:22+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/NCBI-Virus_Redirect-4-e1697657977948.png\" \/>\n\t<meta property=\"og:image:width\" content=\"1100\" \/>\n\t<meta property=\"og:image:height\" content=\"575\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"author\" content=\"NCBI Staff\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@NCBI\" \/>\n<meta name=\"twitter:site\" content=\"@NCBI\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\" \/>\n\t<meta name=\"twitter:data1\" content=\"NCBI Staff\" \/>\n\t<meta name=\"twitter:label2\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data2\" content=\"2 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Article\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#article\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\"},\"author\":{\"name\":\"NCBI Staff\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#\/schema\/person\/4f41ea6a31cea38a9a1b1419c048e50b\"},\"headline\":\"Upcoming Changes to Virus Data Resources at NCBI\",\"datePublished\":\"2023-10-19T13:38:56+00:00\",\"dateModified\":\"2024-04-05T19:15:22+00:00\",\"mainEntityOfPage\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\"},\"wordCount\":382,\"commentCount\":0,\"publisher\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#organization\"},\"image\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/NCBI-Virus_Redirect-4-e1697657977948.png?fit=1100%2C575&ssl=1\",\"keywords\":[\"GenBank\",\"Multiple Sequence Alignment Viewer (MSAV)\",\"NCBI Virus\",\"RefSeq\"],\"articleSection\":[\"What's New\"],\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"CommentAction\",\"name\":\"Comment\",\"target\":[\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#respond\"]}]},{\"@type\":\"WebPage\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\",\"url\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\",\"name\":\"Upcoming Changes to Virus Data Resources at NCBI - NCBI Insights\",\"isPartOf\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/#website\"},\"primaryImageOfPage\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#primaryimage\"},\"image\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#primaryimage\"},\"thumbnailUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/NCBI-Virus_Redirect-4-e1697657977948.png?fit=1100%2C575&ssl=1\",\"datePublished\":\"2023-10-19T13:38:56+00:00\",\"dateModified\":\"2024-04-05T19:15:22+00:00\",\"breadcrumb\":{\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#breadcrumb\"},\"inLanguage\":\"en-US\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/\"]}]},{\"@type\":\"ImageObject\",\"inLanguage\":\"en-US\",\"@id\":\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/10\/19\/changes-virus-data-resources-ncbi\/#primaryimage\",\"url\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/NCBI-Virus_Redirect-4-e1697657977948.png?fit=1100%2C575&ssl=1\",\"contentUrl\":\"https:\/\/i0.wp.com\/ncbiinsights.ncbi.nlm.nih.gov\/wp-content\/uploads\/2023\/10\/NCBI-Virus_Redirect-4-e1697657977948.png?fit=1100%2C575&ssl=1\",\"width\":1100,\"height\":575,\"caption\":\"Computer screen with the Virus Variation Resource page on screen. Text says: Important update! 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