{"id":12084,"date":"2023-09-11T14:22:48","date_gmt":"2023-09-11T18:22:48","guid":{"rendered":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/?p=12084"},"modified":"2023-09-11T14:42:48","modified_gmt":"2023-09-11T18:42:48","slug":"refseq-release-220","status":"publish","type":"post","link":"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/09\/11\/refseq-release-220\/","title":{"rendered":"RefSeq Release 220"},"content":{"rendered":"<p>RefSeq release 220 is now available <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/refseq\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">online<\/a>\u00a0and from the\u00a0<a href=\"https:\/\/ftp.ncbi.nlm.nih.gov\/refseq\/release\/\">FTP<\/a>\u00a0site. You can access RefSeq data through\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">NCBI Datasets<\/a>.<\/p>\n<h4>What\u2019s included in this release?<\/h4>\n<p>As of September 5, 2023, this full release incorporates genomic, transcript, and protein data containing:<\/p>\n<ul>\n<li>391,350,361 records<\/li>\n<li>289,333,423 proteins<\/li>\n<li>56,423,426 RNAs<\/li>\n<li>sequences from 141,099 organisms\u00a0<span id=\"more-11335\"><\/span><\/li>\n<\/ul>\n<p><!--more--><\/p>\n<p>The release is provided in several directories as a complete dataset and divided by logical groupings.<span id=\"more-10930\"><\/span><span id=\"more-10489\"><\/span><\/p>\n<h4>Updates &amp; announcements<\/h4>\n<h6>New eukaryotic genome annotations<\/h6>\n<p>This release includes new annotations generated by NCBI\u2019s eukaryotic genome annotation pipeline for 35 species, including:<\/p>\n<ul>\n<li>Silvery gibbon, based on updated assembly HMol_V3 (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_009828535.3\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">GCF_009828535.3_2023_07<\/a>)<\/li>\n<li>Cactus mouse, based on new assembly PerEre_H2_v1 (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_949786415.1\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">GCF_949786415.1_2023_08<\/a>)<\/li>\n<li>Black rhinoceros, based on new assembly mDicBic1.mat.cur (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_020826845.1\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">GCF_020826845.1_2023_07<\/a>) <em>(pictured)<\/em><\/li>\n<li>Ahaetulla prasina, based on new assembly ASM2864084v1 (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_028640845.1\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">GCF_028640845.1_2023_07<\/a>)<\/li>\n<li>Tigriopus californicus, based on new assembly Tcal_SD_v2.1 (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_007210705.1\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">GCF_007210705.1_2023_08<\/a>)<\/li>\n<li>Magnolia sinica, based on new assembly MsV1 (<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/datasets\/genome\/GCF_029962835.1\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">GCF_029962835.1_2023_07<\/a>)<\/li>\n<\/ul>\n<h6>Future changes<\/h6>\n<p>The Eukaryotic Gene Annotation Pipeline software was recently updated to version 10.2.<br \/>\nThe release notes are available <a href=\"https:\/\/www.ncbi.nlm.nih.gov\/genome\/annotation_euk\/release_notes\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">here<\/a>. The updated processes and reporting will apply to new annotations in the next release (November 2023).<\/p>\n<h4>Stay up to date<\/h4>\n<p>RefSeq is part of the\u00a0<a href=\"https:\/\/www.ncbi.nlm.nih.gov\/comparative-genomics-resource\/?utm_source=ncbi_insights&amp;utm_medium=referral&amp;utm_campaign=refseq-release-220-20230911\">NIH Comparative Genomics Resource (CGR).<\/a>\u00a0<span data-contrast=\"none\">CGR facilitates reliable comparative genomics analyses\u202ffor all eukaryotic organisms through an NCBI Toolkit and community collaboration. <\/span><span class=\"TextRun Highlight SCXW148001688 BCX8\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"none\"><span class=\"NormalTextRun SCXW148001688 BCX8\">Follow us on social\u202f<\/span><\/span><a class=\"Hyperlink SCXW148001688 BCX8\" href=\"https:\/\/twitter.com\/ncbi\" target=\"_blank\" rel=\"noreferrer noopener\"><span class=\"TextRun Highlight SCXW148001688 BCX8\" lang=\"EN-US\" xml:lang=\"EN-US\" data-contrast=\"none\"><span class=\"NormalTextRun SCXW148001688 BCX8\" data-ccp-charstyle=\"Hyperlink\">@NCBI<\/span><\/span><\/a>\u00a0and\u00a0<a class=\"external-link\" href=\"https:\/\/public.govdelivery.com\/accounts\/USNLMOCPL\/subscriber\/new?topic_id=USNLMOCPL_50%22\" rel=\"nofollow\">join our mailing list<\/a>\u00a0to keep up to date with RefSeq and other CGR news.<\/p>\n<h4>Questions?<\/h4>\n<p><span data-contrast=\"auto\">If you have questions or would like to provide feedback, please <a href=\"https:\/\/support.nlm.nih.gov\/support\/create-case\/\">reach out<\/a> to us!<\/span><span data-contrast=\"auto\">\u00a0<\/span><\/p>\n","protected":false},"excerpt":{"rendered":"<p>RefSeq release 220 is now available online\u00a0and from the\u00a0FTP\u00a0site. You can access RefSeq data through\u00a0NCBI Datasets. What\u2019s included in this release? As of September 5, 2023, this full release incorporates genomic, transcript, and protein data containing: 391,350,361 records 289,333,423 proteins 56,423,426 RNAs sequences from 141,099 organisms\u00a0<\/p>\n","protected":false},"author":42204617,"featured_media":12089,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","jetpack_post_was_ever_published":false,"_jetpack_newsletter_access":"","_jetpack_dont_email_post_to_subs":false,"_jetpack_newsletter_tier_id":0,"_jetpack_memberships_contains_paywalled_content":false,"_jetpack_memberships_contains_paid_content":false,"footnotes":"","jetpack_publicize_message":"RefSeq Release 220","jetpack_publicize_feature_enabled":true,"jetpack_social_post_already_shared":true,"jetpack_social_options":{"image_generator_settings":{"template":"highway","enabled":false},"version":2}},"categories":[2248],"tags":[693060768,693060686,574294629,27739816],"table_tags":[],"class_list":["post-12084","post","type-post","status-publish","format-standard","has-post-thumbnail","hentry","category-whats-new","tag-comparative-genomics-resource-cgr","tag-datasets","tag-eukaryotic-genome-annotation","tag-refseq"],"jetpack_publicize_connections":[],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v24.6 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<title>RefSeq Release 220 - NCBI Insights<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/ncbiinsights.ncbi.nlm.nih.gov\/2023\/09\/11\/refseq-release-220\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"RefSeq Release 220 - NCBI Insights\" \/>\n<meta property=\"og:description\" content=\"RefSeq release 220 is now available online\u00a0and from the\u00a0FTP\u00a0site. You can access RefSeq data through\u00a0NCBI Datasets. What\u2019s included in this release? 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