accession
Print a data report containing virus genome metadata by accession
accession
Name
datasets summary virus genome accession - Print a data report containing virus genome metadata by accession
Synopsis
datasets summary virus genome accession [flags]
Description
Print a data report containing virus genome metadata by nucleotide accession. The data report is returned in JSON format.
Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.
Examples
datasets summary virus genome accession NC_045512.2
Options
--annotated Limit to annotated genomes
--api-key string Specify an NCBI API key
--as-json-lines Output results in JSON Lines format
--complete-only Limit to complete genomes
--debug Emit debugging info
--geo-location string Limit to genomes isolated from a specified geographic location (continent or country)
--help Print detailed help about a datasets command
--host string Limit to virus genomes isolated from a specified host species
--inputfile string Read a list of nucleotide accessions from a file to use as input
--limit string Limit the number of virus summaries returned
* all: returns all matching virus summaries
* a number: returns the specified number of matching virus summaries
(default "all")
--lineage string Limit results by Pango lineage (only SARS-CoV-2)
--refseq Limit to RefSeq genomes
--released-after string Limit to genomes released on or after a specified date (free format, ISO 8601 YYYY-MM-DD recommended)
--report string Specify report virus genome report summary type
* virus: returns a primary virus data report
* annotation: returns a virus annotation report
(default "virus")
--updated-after string Limit to genomes updated on or after a specified date (free format, ISO 8601 YYYY-MM-DD recommended)
--usa-state string Limit to genomes isolated from a specified U.S. state (two-letter abbreviation)
--version Print version of datasets
Generated February 26, 2025