organelle

Convert Organelle Report into an Excel workbook

organelle

Convert Organelle Report into an Excel workbook

Name

dataformat excel organelle - Convert Organelle Report into an Excel workbook

Synopsis

dataformat excel organelle [flags]

Description

Convert Organelle Report into an Excel workbook.

Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.

Examples

  dataformat excel organelle --inputfile organelle_package/ncbi_dataset/data/organelle_report.jsonl --outputfile organelle.xlsx
  dataformat excel organelle --package organelle-package.zip --outputfile organelle.xlsx

Options

      --fields strings      Comma-separated list of field names that supports wildcards (*). Names with wildcards must be quoted, for example: refseq-accession,genbank-accession,'organism*'
      --force               Force dataformat to run without type check prompt
  -h, --help                help for organelle
      --inputfile string    Input file (default "/dev/stdin")
      --outputfile string   Excel workbook file
      --package string      Data package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields

MnemonicName
bioproject-accessionBioProjectsAccession
bioproject-parent-accessionsBioProjectsParent Accessions
bioproject-titleBioProjectsTitle
biosample-accessionBioSampleAccession
descriptionDescription
genbank-accessionGenbank InformationAccession
genbank-submission-dateGenbank InformationSubmission Date
gene-lnc-rnaGene lncRNA
gene-protein-codingGene Protein-coding
gene-r-rnaGene rRNA
gene-t-rnaGene tRNA
gene-totalGene Total
organism-common-nameOrganism Common Name
organism-infraspecific-breedOrganism Infraspecific Names Breed
organism-infraspecific-cultivarOrganism Infraspecific Names Cultivar
organism-infraspecific-ecotypeOrganism Infraspecific Names Ecotype
organism-infraspecific-isolateOrganism Infraspecific Names Isolate
organism-infraspecific-sexOrganism Infraspecific Names Sex
organism-infraspecific-strainOrganism Infraspecific Names Strain
organism-nameOrganism Name
organism-pangolinOrganism Pangolin Classification
organism-tax-idOrganism Taxonomic ID
refseq-accessionRefSeq InformationAccession
refseq-submission-dateRefSeq InformationSubmission Date
Generated February 26, 2025