genome-seq
Convert Genome Assembly Sequence Report into an Excel workbook
genome-seq
Convert Genome Assembly Sequence Report into an Excel workbook
Name
dataformat excel genome-seq - Convert Genome Assembly Sequence Report into an Excel workbook
Synopsis
dataformat excel genome-seq [flags]
Description
Convert Genome Assembly Sequence Report into an Excel workbook.
Refer to NCBI’s command line start documentation for information about getting started with the command-line tools.
Examples
dataformat excel genome-seq --inputfile human_package/ncbi_dataset/data/GCF_000001405.40/sequence_report.jsonl --outputfile human-ref-genome-seq.xlsx
dataformat excel genome-seq --package human.zip --inputfile GCF_000001405.40/sequence_report.jsonl --outputfile human-ref-genome-seq.xlsx
Options
--fields strings comma-separated list of fields
-h, --help help for genome-seq
--inputfile string input file (default "/dev/stdin")
-o, --outputfile string Excel workbook file
--package string datasets package (zip archive), inputfile parameter is relative to the root path inside the archive
Fields
Mnemonic | Name |
---|---|
accession | Assembly Accession |
assm-unit-name | Assembly-unit name |
chr-name | Chromosome name |
gc-count | GC Count |
genbank-seq-acc | GenBank seq accession |
mol-type | Molecule type |
ordering | Ordering |
refseq-seq-acc | RefSeq seq accession |
role | Role |
seq-length | Seq length |
ucsc-style-name | UCSC style name |