gene
download a gene dataset
datasets download - download a gene, genome or coronavirus dataset as a zip file
datasets download [flags]
Download genome, gene and coronavirus data packages, including sequence, annotation, and metadata, as a zip file.
Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.
datasets download genome accession GCF_000001405.40 --chromosomes X,Y --exclude-gff3 --exclude-rna
datasets download genome taxon "bos taurus"
datasets download gene gene-id 672
datasets download gene symbol brca1 --taxon mouse
datasets download gene accession NP_000483.3
datasets download virus genome taxon sars-cov-2 --host dog
datasets download virus protein S --host dog --filename SARS2-spike-dog.zip
datasets download --input-json request_file.json --filename output.zip
--api-key string NCBI Datasets API Key
--filename string specify a custom file name for the downloaded dataset (default "ncbi_dataset.zip")
-h, --help help for download
--input-json string a file that contains a valid json request object for genome or gene queries
--no-progressbar hide progress bar
download a gene dataset
download a genome dataset
download a coronavirus dataset
download an ortholog dataset