gene-id
download an ortholog dataset by NCBI Gene ID
datasets download ortholog - download an ortholog dataset
Download an ortholog data package including gene, transcript and protein sequence, a data table and a data report. Ortholog data is calculated by NCBI for vertebrates and insects. Ortholog data packages can be specified by NCBI Gene ID, symbol or RefSeq accession. Data packages are downloaded as a zip file.
The default gene dataset includes the following files:
Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.
datasets download ortholog gene-id 672
--api-key string NCBI Datasets API Key
--exclude-gene exclude gene.fna (gene sequence file)
--exclude-protein exclude protein.faa (protein sequence file)
--exclude-rna exclude rna.fna (transcript sequence file)
--filename string specify a custom file name for the downloaded dataset (default "ncbi_dataset.zip")
-h, --help help for ortholog
--include-3p-utr include 3p_utr.fna (3'-UTR sequence file)
--include-5p-utr include 5p_utr.fna (5'-UTR sequence file)
--include-cds include cds.fna (CDS sequence file)
--no-progressbar hide progress bar
--taxon-filter strings limit results to ortholog data for a specified taxonomic group
download an ortholog dataset by NCBI Gene ID
download an ortholog dataset by gene symbol
download an ortholog dataset by RefSeq nucleotide or protein accession