accession
print a summary of a genome dataset by assembly accession
datasets summary genome - print a summary of a genome dataset
Print a summary of a genome data package by assembly accession, bioproject accession or taxon. The summary is returned in JSON format.
Refer to NCBI’s download and install documentation for information about getting started with the command-line tools.
datasets summary genome accession GCF_000001405.40
datasets summary genome taxon mouse
datasets summary genome taxon human --assembly-level chromosome,complete_genome
datasets summary genome taxon mouse --search C57BL/6J --search "Broad Institute"
-a, --annotated only include genomes with annotation
--api-key string NCBI Datasets API Key
--as-json-lines Stream results as newline delimited JSON-Lines
--assembly-level string restrict assemblies to a comma-separated list of one or more of: chromosome, complete_genome, contig, scaffold
--assembly-source string restrict assemblies to refseq or genbank only
--assmaccs return only assembly accessions
-h, --help help for genome
--limit string limit the number of genome summaries returned
* "all": returns all matching genome summaries
* "none": returns only the number of matching genome summaries
* a number: returns the specified number of matching genome summaries
(default "all")
--no-progressbar hide progress bar
--reference limit to reference and representative (GCF_ and GCA_) assemblies
--released-before string only include genomes that have been released before a specified date (MM/DD/YYYY)
--released-since string only include genomes that have been released after a specified date (MM/DD/YYYY)
--search strings only include genomes that have the specified text in the
searchable fields: species and infraspecies, assembly name and submitter
To provide multiple strings '--search' can be included multiple times
print a summary of a genome dataset by assembly accession
print a summary of a genome dataset by taxon (NCBI Taxonomy ID, scientific or common name at any tax rank)