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| CGC_DbTagAlias (void) |
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| ~CGC_DbTagAlias (void) |
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| CGC_DbTagAlias_Base (void) |
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virtual | ~CGC_DbTagAlias_Base (void) |
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| DECLARE_INTERNAL_TYPE_INFO () |
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bool | IsSetRefseq (void) const |
| the refseq assembly release-id Check if a value has been assigned to Refseq data member. More...
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bool | CanGetRefseq (void) const |
| Check if it is safe to call GetRefseq method. More...
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void | ResetRefseq (void) |
| Reset Refseq data member. More...
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const TRefseq & | GetRefseq (void) const |
| Get the Refseq member data. More...
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void | SetRefseq (TRefseq &value) |
| Assign a value to Refseq data member. More...
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TRefseq & | SetRefseq (void) |
| Assign a value to Refseq data member. More...
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bool | IsSetGenbank (void) const |
| the genbank assembly release-id Check if a value has been assigned to Genbank data member. More...
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bool | CanGetGenbank (void) const |
| Check if it is safe to call GetGenbank method. More...
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void | ResetGenbank (void) |
| Reset Genbank data member. More...
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const TGenbank & | GetGenbank (void) const |
| Get the Genbank member data. More...
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void | SetGenbank (TGenbank &value) |
| Assign a value to Genbank data member. More...
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TGenbank & | SetGenbank (void) |
| Assign a value to Genbank data member. More...
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bool | IsSetSimilarity (void) const |
| Check if a value has been assigned to Similarity data member. More...
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bool | CanGetSimilarity (void) const |
| Check if it is safe to call GetSimilarity method. More...
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void | ResetSimilarity (void) |
| Reset Similarity data member. More...
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TSimilarity | GetSimilarity (void) const |
| Get the Similarity member data. More...
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void | SetSimilarity (TSimilarity value) |
| Assign a value to Similarity data member. More...
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TSimilarity & | SetSimilarity (void) |
| Assign a value to Similarity data member. More...
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virtual void | Reset (void) |
| Reset the whole object. More...
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| CSerialObject (void) |
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virtual | ~CSerialObject (void) |
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virtual const CTypeInfo * | GetThisTypeInfo (void) const =0 |
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virtual void | Assign (const CSerialObject &source, ESerialRecursionMode how=eRecursive) |
| Set object to copy of another one. More...
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virtual bool | Equals (const CSerialObject &object, ESerialRecursionMode how=eRecursive) const |
| Check if both objects contain the same values. More...
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virtual void | DebugDump (CDebugDumpContext ddc, unsigned int depth) const |
| Define method for dumping debug information. More...
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void | ThrowUnassigned (TMemberIndex index) const |
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void | ThrowUnassigned (TMemberIndex index, const char *file_name, int file_line) const |
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bool | HasNamespaceName (void) const |
| Check if object data type has namespace name. More...
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const string & | GetNamespaceName (void) const |
| Get namespace name. More...
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bool | HasNamespacePrefix (void) const |
| Check if data type has namespace prefix. More...
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const string & | GetNamespacePrefix (void) const |
| Get namespace prefix. More...
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| CObject (void) |
| Constructor. More...
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| CObject (const CObject &src) |
| Copy constructor. More...
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virtual | ~CObject (void) |
| Destructor. More...
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CObject & | operator= (const CObject &src) THROWS_NONE |
| Assignment operator. More...
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bool | CanBeDeleted (void) const THROWS_NONE |
| Check if object can be deleted. More...
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bool | IsAllocatedInPool (void) const THROWS_NONE |
| Check if object is allocated in memory pool (not system heap) More...
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bool | Referenced (void) const THROWS_NONE |
| Check if object is referenced. More...
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bool | ReferencedOnlyOnce (void) const THROWS_NONE |
| Check if object is referenced only once. More...
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void | AddReference (void) const |
| Add reference to object. More...
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void | RemoveReference (void) const |
| Remove reference to object. More...
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void | ReleaseReference (void) const |
| Remove reference without deleting object. More...
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virtual void | DoNotDeleteThisObject (void) |
| Mark this object as not allocated in heap – do not delete this object. More...
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virtual void | DoDeleteThisObject (void) |
| Mark this object as allocated in heap – object can be deleted. More...
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void * | operator new (size_t size) |
| Define new operator for memory allocation. More...
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void * | operator new[] (size_t size) |
| Define new[] operator for 'array' memory allocation. More...
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void | operator delete (void *ptr) |
| Define delete operator for memory deallocation. More...
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void | operator delete[] (void *ptr) |
| Define delete[] operator for memory deallocation. More...
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void * | operator new (size_t size, void *place) |
| Define new operator. More...
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void | operator delete (void *ptr, void *place) |
| Define delete operator. More...
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void * | operator new (size_t size, CObjectMemoryPool *place) |
| Define new operator using memory pool. More...
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void | operator delete (void *ptr, CObjectMemoryPool *place) |
| Define delete operator. More...
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| CDebugDumpable (void) |
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virtual | ~CDebugDumpable (void) |
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void | DebugDumpText (ostream &out, const string &bundle, unsigned int depth) const |
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void | DebugDumpFormat (CDebugDumpFormatter &ddf, const string &bundle, unsigned int depth) const |
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void | DumpToConsole (void) const |
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enum | ESimilarity { eSimilarity_unknown = 0
, eSimilarity_identical = 1
, eSimilarity_different = 255
} |
| Similarity: relationship between 2 assemblies represented by DbTags Can be expanded to multiple level of identicality can use bitmap to flag ambiguity between different identicality levels. More...
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enum class | E_memberIndex { e__allMandatory = 0
, e_refseq
, e_genbank
, e_similarity
} |
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typedef CDbtag | TRefseq |
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typedef CDbtag | TGenbank |
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typedef int | TSimilarity |
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typedef Tparent::CMemberIndex< E_memberIndex, 4 > | TmemberIndex |
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enum | EAllocFillMode { eAllocFillNone = 1
, eAllocFillZero
, eAllocFillPattern
} |
| Control filling of newly allocated memory. More...
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typedef CObjectCounterLocker | TLockerType |
| Default locker type for CRef. More...
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typedef atomic< Uint8 > | TCounter |
| Counter type is CAtomiCounter. More...
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typedef Uint8 | TCount |
| Alias for value type of counter. More...
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static const NCBI_NS_NCBI::CEnumeratedTypeValues *ENUM_METHOD_NAME() | ESimilarity (void) |
| Access to ESimilarity's attributes (values, names) as defined in spec. More...
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static void | SetVerifyDataThread (ESerialVerifyData verify) |
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static void | SetVerifyDataGlobal (ESerialVerifyData verify) |
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static string | UnassignedString (void) |
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static CStringUTF8 | UnassignedStringUTF8 (void) |
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static char | UnassignedByte (void) |
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static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (void) |
| Define method to throw null pointer exception. More...
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static NCBI_XNCBI_EXPORT void | ThrowNullPointerException (const type_info &type) |
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static EAllocFillMode | GetAllocFillMode (void) |
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static void | SetAllocFillMode (EAllocFillMode mode) |
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static void | SetAllocFillMode (const string &value) |
| Set mode from configuration parameter value. More...
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static void | EnableDebugDump (bool on) |
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static const char * | ms_UnassignedStr = "<*unassigned*>" |
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static const char | ms_UnassignedByte = char(0xcd) |
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static const TCount | eCounterBitsCanBeDeleted = 1 << 0 |
| Define possible object states. More...
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static const TCount | eCounterBitsInPlainHeap = 1 << 1 |
| Heap signature was found. More...
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static const TCount | eCounterBitsPlaceMask |
| Mask for 'in heap' state flags. More...
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static const int | eCounterStep = 1 << 2 |
| Skip over the "in heap" bits. More...
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static const TCount | eCounterValid = TCount(1) << (sizeof(TCount) * 8 - 2) |
| Minimal value for valid objects (reference counter is zero) Must be a single bit value. More...
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static const TCount | eCounterStateMask |
| Valid object, and object in heap. More...
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virtual void | DeleteThis (void) |
| Virtual method "deleting" this object. More...
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CGC_DbTagAlias –.
Definition at line 65 of file GC_DbTagAlias.hpp.