mirror of
https://github.com/DOI-DO/j40-cejst-2.git
synced 2025-08-28 19:41:39 -07:00
Generate Geo-aware scores for all zoom levels (#391)
* generate Geo-aware scores for all zoom levels * usa high progress * testing dissolve * checkpoint * changing type * removing breakpoint * validation notebooks * quick update * score validation * fixes for county merge * code completed
This commit is contained in:
Jorge Escobar
GitHub
parent
446c8d1f68
commit
b404fdcc43
14 changed files with 3023 additions and 270 deletions
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@ -2,7 +2,9 @@
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"cells": [
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{
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"cell_type": "code",
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"execution_count": 1,
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"metadata": {},
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"outputs": [],
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"source": [
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"import pandas as pd\n",
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"import geopandas as gpd\n",
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@ -10,24 +12,24 @@
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"import pathlib\n",
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"import os\n",
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"import sys"
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],
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"outputs": [],
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"source": [
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"module_path = os.path.abspath(os.path.join(\"..\"))\n",
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"if module_path not in sys.path:\n",
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" sys.path.append(module_path)"
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"cell_type": "code",
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"execution_count": null,
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"execution_count": 3,
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"metadata": {},
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"outputs": [],
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"source": [
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"def merge_and_simplify_file(file_name: str, usa_df: pd.DataFrame):\n",
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" state_gdf = gpd.read_file(file_name)\n",
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@ -100,104 +102,133 @@
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" state_bucketed_df = aggregate_buckets(state_tracts, \"mean\")\n",
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" compressed = breakup_multipolygons(state_bucketed_df, num_buckets)\n",
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" write_to_file(compressed, file_name)"
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],
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"outputs": [],
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"metadata": {}
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"cell_type": "code",
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"execution_count": null,
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"execution_count": 6,
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"metadata": {
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"id": "Ia5bqxS2LJqe"
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},
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"outputs": [],
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"source": [
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"DATA_DIR = pathlib.Path.cwd().parent / \"data\"\n",
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"CENSUS_GEOJSON_DIR = DATA_DIR / \"census\" / \"geojson\"\n",
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"CEJST_DATA_PATH = DATA_DIR / \"score\" / \"csv\" / \"usa.csv\"\n",
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"score_df = pd.read_csv(CEJST_DATA_PATH, dtype={\"GEOID10\": \"object\"})"
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],
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"outputs": [],
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"metadata": {
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"id": "Ia5bqxS2LJqe"
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}
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"CEJST_DATA_PATH = DATA_DIR / \"score\" / \"csv\" / \"tiles\" / \"usa.csv\"\n",
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"score_df = pd.read_csv(CEJST_DATA_PATH, dtype={\"GEOID10\": \"object\"}, low_memory=False)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"master_df = gpd.GeoDataFrame()"
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],
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"outputs": [],
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"execution_count": 7,
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"metadata": {
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"id": "Dtf5qD50JvCw"
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}
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},
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"outputs": [],
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"source": [
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"master_df = gpd.GeoDataFrame()"
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]
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},
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{
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"cell_type": "code",
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"execution_count": 8,
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"text/plain": [
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"Empty GeoDataFrame\n",
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"Columns: []\n",
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"Index: []"
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]
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},
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"execution_count": 8,
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"metadata": {},
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"output_type": "execute_result"
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}
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"source": [
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"master_df.head()"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"id": "PNdw8bERJyKk"
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},
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"outputs": [],
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"source": [
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"for file_name in CENSUS_GEOJSON_DIR.rglob('*.json'):\n",
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" state_gdf = gpd.read_file(file_name)\n",
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" master_df = master_df.append(state_gdf)"
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],
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"outputs": [],
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"metadata": {
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"id": "PNdw8bERJyKk"
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"master_df = master_df.to_crs(\"+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs\")"
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],
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"outputs": [],
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"metadata": {
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"id": "B5SS9y2pLwks"
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}
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},
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"outputs": [],
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"source": [
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"master_df = master_df.to_crs(\"+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"master_df.shape"
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],
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"outputs": [
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{
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"output_type": "execute_result",
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"data": {
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"text/plain": [
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"(220742, 13)"
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]
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"metadata": {
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"tags": []
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"execution_count": 68
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"metadata": {
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"colab": {
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"base_uri": "https://localhost:8080/"
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"master_df.shape"
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"master_df.head(2)"
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"outputs": [
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{
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"output_type": "execute_result",
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"data": {
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"text/plain": [
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" STATEFP10 ... geometry\n",
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"0 01 ... POLYGON ((-85.17240 31.82508, -85.17334 31.824...\n",
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"1 01 ... POLYGON ((-85.16283 31.81051, -85.16284 31.813...\n",
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"\n",
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"[2 rows x 13 columns]"
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"text/html": [
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@ -268,61 +299,61 @@
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" </tbody>\n",
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"</table>\n",
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"</div>"
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],
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"text/plain": [
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" STATEFP10 ... geometry\n",
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"0 01 ... POLYGON ((-85.17240 31.82508, -85.17334 31.824...\n",
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"1 01 ... POLYGON ((-85.16283 31.81051, -85.16284 31.813...\n",
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"\n",
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"[2 rows x 13 columns]"
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},
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"execution_count": 69,
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"metadata": {
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"tags": []
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},
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"execution_count": 69
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"output_type": "execute_result"
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"source": [
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"master_df.head(2)"
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"id": "bAMmGSgzVml0"
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},
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"outputs": [],
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"source": [
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"usa_df = pd.read_csv(CEJST_DATA_PATH, dtype={\"GEOID10\": \"object\"})"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"id": "U7M7dExdV2Vh"
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},
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"outputs": [],
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"source": [
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"usa_merged = master_df.merge(usa_df, on=\"GEOID10\", how=\"left\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_df = pd.read_csv(CEJST_DATA_PATH, dtype={\"GEOID10\": \"object\"})"
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],
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"outputs": [],
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"metadata": {
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"id": "bAMmGSgzVml0"
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}
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_merged = master_df.merge(usa_df, on=\"GEOID10\", how=\"left\")"
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],
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"outputs": [],
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"metadata": {
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"id": "U7M7dExdV2Vh"
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_merged.head(2)"
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"id": "Sr25DUkxWVhg",
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"outputs": [
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{
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"output_type": "execute_result",
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"data": {
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"text/plain": [
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" STATEFP10 COUNTYFP10 ... Score E (percentile) Score E (top 25th percentile)\n",
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"0 01 005 ... 0.576986 False\n",
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"1 01 005 ... 0.670349 False\n",
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"\n",
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"[2 rows x 98 columns]"
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"text/html": [
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"</table>\n",
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"<p>2 rows × 98 columns</p>\n",
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"text/plain": [
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" STATEFP10 COUNTYFP10 ... Score E (percentile) Score E (top 25th percentile)\n",
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"0 01 005 ... 0.576986 False\n",
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"1 01 005 ... 0.670349 False\n",
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"\n",
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"[2 rows x 98 columns]"
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"execution_count": 72,
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"metadata": {
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"tags": []
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"execution_count": 72
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"output_type": "execute_result"
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"source": [
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"usa_merged.head(2)"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_merged_compressed = gpd.GeoDataFrame(usa_merged, crs=\"EPSG:4326\")"
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],
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"outputs": [],
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"metadata": {
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"colab": {
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"base_uri": "https://localhost:8080/"
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"id": "ANMlAB8Qmtu8",
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"outputId": "44934741-90a9-4664-fab5-2c39b348d2be"
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},
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"outputs": [],
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"source": [
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"usa_merged_compressed = gpd.GeoDataFrame(usa_merged, crs=\"EPSG:4326\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_merged_compressed.to_file(CENSUS_GEOJSON_DIR / \"usa_merged.geojson\", driver=\"GeoJSON\")"
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],
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"outputs": [],
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"metadata": {
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"id": "PBPD9LQctvPJ"
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}
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},
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"outputs": [],
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"source": [
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"usa_merged_compressed.to_file(CENSUS_GEOJSON_DIR / \"usa_merged.geojson\", driver=\"GeoJSON\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"id": "qAAEr1z-WZAT"
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},
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"outputs": [],
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"source": [
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"usa_simplified = usa_merged[\n",
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" [\"GEOID10\", \"Score D (percentile)\", \"geometry\"]\n",
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" ].reset_index(drop=True)"
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],
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"outputs": [],
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"metadata": {
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"id": "qAAEr1z-WZAT"
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}
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{
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"cell_type": "code",
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"execution_count": null,
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"metadata": {
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"id": "SCNUjEbzWg-o"
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},
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"outputs": [],
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"source": [
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"usa_simplified.rename(\n",
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" columns={\"Score D (percentile)\": \"D_SCORE\"}, inplace=True\n",
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" )"
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],
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"outputs": [],
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"metadata": {
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"id": "SCNUjEbzWg-o"
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}
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_cbg_compressed = gpd.GeoDataFrame(\n",
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" usa_simplified, columns=[\"D_SCORE\", \"geometry\"], crs=\"EPSG:4326\"\n",
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" )"
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],
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"outputs": [],
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"metadata": {
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"colab": {
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"base_uri": "https://localhost:8080/"
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},
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"id": "Ej70uX0AmW0J",
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"outputId": "88908f5e-b62d-494f-f0ea-649089b6652a"
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}
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},
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"outputs": [],
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"source": [
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"usa_cbg_compressed = gpd.GeoDataFrame(\n",
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" usa_simplified, columns=[\"D_SCORE\", \"geometry\"], crs=\"EPSG:4326\"\n",
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" )"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_cbg_compressed.to_file(CENSUS_GEOJSON_DIR / \"usa_cbg_scoreD.geojson\", driver=\"GeoJSON\")"
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],
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"outputs": [],
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"metadata": {
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"id": "UE12dWmame3I"
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}
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},
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"outputs": [],
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"source": [
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"usa_cbg_compressed.to_file(CENSUS_GEOJSON_DIR / \"usa_cbg_scoreD.geojson\", driver=\"GeoJSON\")"
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]
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},
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{
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"cell_type": "code",
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"execution_count": null,
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"source": [
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"usa_tracts = aggregate_to_tracts(usa_simplified)"
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],
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"outputs": [],
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"metadata": {
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"id": "wWFBduQQXGtM"
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}
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},
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"outputs": [],
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"source": [
|
||||
"usa_tracts = aggregate_to_tracts(usa_simplified)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 76,
|
||||
"source": [
|
||||
"num_buckets = 10"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "L-PTnEWOpDtX"
|
||||
}
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"num_buckets = 10"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"tracts_compressed = gpd.GeoDataFrame(\n",
|
||||
" usa_tracts, columns=[\"D_SCORE\", \"geometry\"], crs=\"EPSG:4326\"\n",
|
||||
" )"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"colab": {
|
||||
"base_uri": "https://localhost:8080/"
|
||||
},
|
||||
"id": "kTJafXcqXC01",
|
||||
"outputId": "bd197952-76b7-4f99-edef-983f20d7acfb"
|
||||
}
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"tracts_compressed = gpd.GeoDataFrame(\n",
|
||||
" usa_tracts, columns=[\"D_SCORE\", \"geometry\"], crs=\"EPSG:4326\"\n",
|
||||
" )"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"tracts_compressed.to_file(CENSUS_GEOJSON_DIR / \"usa_tracts_score.geojson\", driver=\"GeoJSON\")"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "E2Nh97IlYhCF"
|
||||
}
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"tracts_compressed.to_file(CENSUS_GEOJSON_DIR / \"usa_tracts_score.geojson\", driver=\"GeoJSON\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"usa_bucketed = create_buckets_from_tracts(usa_tracts)"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "557zPMWFZC8R"
|
||||
}
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"usa_bucketed = create_buckets_from_tracts(usa_tracts)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"usa_aggregated = aggregate_buckets(usa_bucketed, agg_func=\"mean\")"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "k6RRdKlsaO0a"
|
||||
}
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"usa_aggregated = aggregate_buckets(usa_bucketed, agg_func=\"mean\")"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": 80,
|
||||
"source": [
|
||||
"usa_aggregated.shape"
|
||||
],
|
||||
"outputs": [
|
||||
{
|
||||
"output_type": "execute_result",
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"(10, 2)"
|
||||
]
|
||||
},
|
||||
"metadata": {
|
||||
"tags": []
|
||||
},
|
||||
"execution_count": 80
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"colab": {
|
||||
"base_uri": "https://localhost:8080/"
|
||||
},
|
||||
"id": "-cm5eET2pA1Z",
|
||||
"outputId": "8d5d2e80-ad62-41d5-f1b0-922345f92d62"
|
||||
}
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"compressed = breakup_multipolygons(usa_aggregated, num_buckets)"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "4ZvJra-RaZ4v"
|
||||
}
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"len(compressed)"
|
||||
],
|
||||
},
|
||||
"outputs": [
|
||||
{
|
||||
"output_type": "execute_result",
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"36836"
|
||||
"(10, 2)"
|
||||
]
|
||||
},
|
||||
"execution_count": 80,
|
||||
"metadata": {
|
||||
"tags": []
|
||||
},
|
||||
"execution_count": 82
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"usa_aggregated.shape"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {
|
||||
"id": "4ZvJra-RaZ4v"
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"compressed = breakup_multipolygons(usa_aggregated, num_buckets)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {
|
||||
"colab": {
|
||||
"base_uri": "https://localhost:8080/"
|
||||
},
|
||||
"id": "RDS7Q2WAb4Rx",
|
||||
"outputId": "dcd28a31-083d-482e-b000-b4cd1046d4c2"
|
||||
}
|
||||
},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"36836"
|
||||
]
|
||||
},
|
||||
"execution_count": 82,
|
||||
"metadata": {
|
||||
"tags": []
|
||||
},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"len(compressed)"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"metadata": {
|
||||
"id": "VXTv8UuXb-qU"
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"gdf_compressed = gpd.GeoDataFrame(\n",
|
||||
" compressed, columns=[\"D_SCORE\", \"geometry\"], crs=\"EPSG:4326\"\n",
|
||||
" )"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "VXTv8UuXb-qU"
|
||||
}
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"gdf_compressed.shape"
|
||||
],
|
||||
"outputs": [
|
||||
{
|
||||
"output_type": "execute_result",
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"(36836, 2)"
|
||||
]
|
||||
},
|
||||
"metadata": {
|
||||
"tags": []
|
||||
},
|
||||
"execution_count": 84
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
"colab": {
|
||||
"base_uri": "https://localhost:8080/"
|
||||
},
|
||||
"id": "5v7TyB_rcRgT",
|
||||
"outputId": "997625cc-c57a-4335-9b27-a08e4f8ad117"
|
||||
}
|
||||
},
|
||||
"outputs": [
|
||||
{
|
||||
"data": {
|
||||
"text/plain": [
|
||||
"(36836, 2)"
|
||||
]
|
||||
},
|
||||
"execution_count": 84,
|
||||
"metadata": {
|
||||
"tags": []
|
||||
},
|
||||
"output_type": "execute_result"
|
||||
}
|
||||
],
|
||||
"source": [
|
||||
"gdf_compressed.shape"
|
||||
]
|
||||
},
|
||||
{
|
||||
"cell_type": "code",
|
||||
"execution_count": null,
|
||||
"source": [
|
||||
"gdf_compressed.to_file(CENSUS_GEOJSON_DIR / f\"usa_low.geojson\", driver=\"GeoJSON\")"
|
||||
],
|
||||
"outputs": [],
|
||||
"metadata": {
|
||||
"id": "5eAnPL8McJpn"
|
||||
}
|
||||
},
|
||||
"outputs": [],
|
||||
"source": [
|
||||
"gdf_compressed.to_file(CENSUS_GEOJSON_DIR / f\"usa_low.geojson\", driver=\"GeoJSON\")"
|
||||
]
|
||||
}
|
||||
],
|
||||
"metadata": {
|
||||
|
|
@ -892,9 +927,9 @@
|
|||
"provenance": []
|
||||
},
|
||||
"kernelspec": {
|
||||
"display_name": "Python 3.9.5 ('.venv': venv)",
|
||||
"display_name": "Python 3 (ipykernel)",
|
||||
"language": "python",
|
||||
"name": "python395jvsc74a57bd0935cbd69f49565f763db1e6a6adc70b468d078eb4d5856e64428cea33b57a041"
|
||||
"name": "python3"
|
||||
},
|
||||
"language_info": {
|
||||
"codemirror_mode": {
|
||||
|
|
@ -906,9 +941,9 @@
|
|||
"name": "python",
|
||||
"nbconvert_exporter": "python",
|
||||
"pygments_lexer": "ipython3",
|
||||
"version": "3.9.5"
|
||||
"version": "3.8.2"
|
||||
}
|
||||
},
|
||||
"nbformat": 4,
|
||||
"nbformat_minor": 2
|
||||
}
|
||||
}
|
||||
|
|
|
|||
Loading…
Add table
Add a link
Reference in a new issue