Starting Tribal Boundaries Work (#1736)

* starting tribal pr

* further pipeline work

* bia merge working

* alaska villages and tribal geo generate

* tribal folders

* adding data full run

* tile generation

* tribal tile deploy

.github/workflows/tribal-deploy.yml

@@ -0,0 +1,86 @@
+name: Tribal Layer Deploy
+on:
+  workflow_dispatch:
+    inputs:
+      confirm-action:
+        description: This will deploy tribal map layer, are you sure you want to proceed? (Y/n)
+        default: n
+        required: true
+env:
+  BE_CDN_ID: E1324VDMNCO97N
+jobs:
+  deploy_data:
+    runs-on: ubuntu-latest
+    defaults:
+      run:
+        working-directory: data/data-pipeline
+    strategy:
+      matrix:
+        python-version: [3.9]
+    steps:
+      - name: Checkout source
+        uses: actions/checkout@v2
+      - name: Print variables to help debug
+        uses: hmarr/debug-action@v2
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v2
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Load cached Poetry installation
+        uses: actions/cache@v2
+        id: cached-poetry-dependencies
+        with:
+          path: ~/.cache/pypoetry/virtualenvs
+          key: env-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('**/poetry.lock') }}-${{ hashFiles('.github/workflows/combine-tilefy.yml') }}
+      - name: Install poetry
+        uses: snok/install-poetry@v1
+      - name: Print Poetry settings
+        run: poetry show -v
+      - name: Install dependencies
+        run: poetry add s4cmd && poetry install
+        if: steps.cached-poetry-dependencies.outputs.cache-hit != 'true'
+      - name: Install GDAL/ogr2ogr
+        run: |
+          sudo add-apt-repository ppa:ubuntugis/ppa
+          sudo apt-get update
+          sudo apt-get -y install gdal-bin
+          ogrinfo --version
+      - name: Set timezone for tippecanoe
+        uses: szenius/set-timezone@v1.0
+        with:
+          timezoneLinux: "America/Los_Angeles"
+      - name: Get tippecanoe
+        run: |
+          sudo apt-get install -y software-properties-common libsqlite3-dev zlib1g-dev
+          sudo apt-add-repository -y ppa:git-core/ppa
+          sudo mkdir -p /tmp/tippecanoe-src
+          sudo git clone https://github.com/mapbox/tippecanoe.git /tmp/tippecanoe-src
+      - name: Make tippecanoe
+        working-directory: /tmp/tippecanoe-src
+        run: |
+          sudo /usr/bin/bash -c make
+          mkdir -p /usr/local/bin
+          cp tippecanoe /usr/local/bin/tippecanoe
+          tippecanoe -v
+      - name: Run Scripts
+        run: |
+          poetry run python3 data_pipeline/application.py etl-run --dataset tribal
+          poetry run python3 data_pipeline/application.py generate-map-tiles --generate-tribal-layer
+      - name: Configure AWS Credentials
+        uses: aws-actions/configure-aws-credentials@v1
+        with:
+          aws-access-key-id: ${{ secrets.DATA_DEV_AWS_ACCESS_KEY_ID }}
+          aws-secret-access-key: ${{ secrets.DATA_DEV_AWS_SECRET_ACCESS_KEY }}
+          aws-region: us-east-1
+      - name: Deploy to Geoplatform AWS
+        run: |
+          poetry run s4cmd put ./data_pipeline/data/tribal/geojson/ s3://justice40-data/data-pipeline/data/tribal/geojson --recursive --force  --API-ACL=public-read --num-threads=250
+          poetry run s4cmd put ./data_pipeline/data/tribal/tiles/ s3://justice40-data/data-pipeline/data/tribal/tiles --recursive --force  --API-ACL=public-read --num-threads=250
+      - name: Invalidate cache on AWS CDNs
+        uses: chetan/invalidate-cloudfront-action@master
+        env:
+          DISTRIBUTION: ${{env.BE_CDN_ID}}
+          PATHS: "/*"
+          AWS_REGION: "us-east-1"
+          AWS_ACCESS_KEY_ID: ${{ secrets.DATA_DEV_AWS_ACCESS_KEY_ID }}
+          AWS_SECRET_ACCESS_KEY: ${{ secrets.DATA_DEV_AWS_SECRET_ACCESS_KEY }}

data/data-pipeline/.vscode/launch.json

@@ -68,7 +68,7 @@
       ]
     },
     {
-      "name": "Generate Map Tiles",
+      "name": "Generate Score Tiles",
       "type": "python",
       "request": "launch",
       "module": "data_pipeline.application",
@@ -76,6 +76,16 @@
         "generate-map-tiles"
       ]
     },
+    {
+      "name": "Generate Tribal Tiles",
+      "type": "python",
+      "request": "launch",
+      "module": "data_pipeline.application",
+      "args": [
+        "generate-map-tiles",
+        "-t"
+      ]
+    },
     {
       "name": "ETL Run",
       "type": "python",
@@ -85,6 +95,37 @@
         "etl-run"
       ]
     },
+    {
+      "name": "ETL Run NRI",
+      "type": "python",
+      "request": "launch",
+      "module": "data_pipeline.application",
+      "args": [
+        "etl-run",
+        "--dataset",
+        "national_risk_index"
+      ]
+    },
+    {
+      "name": "ETL Run Tribal",
+      "type": "python",
+      "request": "launch",
+      "module": "data_pipeline.application",
+      "args": [
+        "etl-run",
+        "--dataset",
+        "tribal"
+      ]
+    },
+    {
+      "name": "Data Full Run",
+      "type": "python",
+      "request": "launch",
+      "module": "data_pipeline.application",
+      "args": [
+        "data-full-run",
+      ]
+    },
     {
       "name": "poetry install",
       "type": "python",

data/data-pipeline/data_pipeline/application.py

@@ -13,6 +13,9 @@ from data_pipeline.etl.sources.census.etl_utils import (
     reset_data_directories as census_reset,
     zip_census_data,
 )
+from data_pipeline.etl.sources.tribal.etl_utils import (
+    reset_data_directories as tribal_reset,
+)
 from data_pipeline.tile.generate import generate_tiles
 from data_pipeline.utils import (
     data_folder_cleanup,
@@ -57,6 +60,7 @@ def data_cleanup():
 
     census_reset(data_path)
     data_folder_cleanup()
+    tribal_reset(data_path)
     score_folder_cleanup()
     temp_folder_cleanup()
 
@@ -168,13 +172,21 @@ def geo_score(data_source: str):
 
 
 @cli.command(
-    help="Generate map tiles",
+    help="Generate map tiles. Pass -t to generate tribal layer as well.",
 )
-def generate_map_tiles():
+@click.option(
+    "-t",
+    "--generate-tribal-layer",
+    default=False,
+    required=False,
+    is_flag=True,
+    type=bool,
+)
+def generate_map_tiles(generate_tribal_layer):
     """CLI command to generate the map tiles"""
 
     data_path = settings.APP_ROOT / "data"
-    generate_tiles(data_path)
+    generate_tiles(data_path, generate_tribal_layer)
     sys.exit()
 
 
@@ -271,7 +283,7 @@ def data_full_run(check: bool, data_source: str):
     score_geo(data_source)
 
     logger.info("*** Generating Map Tiles")
-    generate_tiles(data_path)
+    generate_tiles(data_path, True)
 
     file = "first_run.txt"
     cmd = f"touch {data_path}/{file}"

data/data-pipeline/data_pipeline/etl/constants.py

@@ -125,8 +125,15 @@ DATASET_LIST = [
         "class_name": "MarylandEJScreenETL",
     },
 ]
+
 CENSUS_INFO = {
     "name": "census",
     "module_dir": "census",
     "class_name": "CensusETL",
 }
+
+TRIBAL_INFO = {
+    "name": "tribal",
+    "module_dir": "tribal",
+    "class_name": "TribalETL",
+}

data/data-pipeline/data_pipeline/etl/runner.py

@@ -22,7 +22,9 @@ def _get_datasets_to_run(dataset_to_run: str) -> typing.List[dict]:
         None
     """
     dataset_list = constants.DATASET_LIST
-    etls_to_search = dataset_list + [constants.CENSUS_INFO]
+    etls_to_search = (
+        dataset_list + [constants.CENSUS_INFO] + [constants.TRIBAL_INFO]
+    )
 
     if dataset_to_run:
         dataset_element = next(

data/data-pipeline/data_pipeline/etl/sources/census/etl.py

@@ -3,8 +3,8 @@ import json
 import subprocess
 from enum import Enum
 from pathlib import Path
-
 import geopandas as gpd
+
 from data_pipeline.etl.base import ExtractTransformLoad
 from data_pipeline.utils import get_module_logger, unzip_file_from_url
 

data/data-pipeline/data_pipeline/etl/sources/tribal/etl.py

@@ -0,0 +1,195 @@
+from pathlib import Path
+import geopandas as gpd
+import pandas as pd
+
+from data_pipeline.etl.base import ExtractTransformLoad
+from data_pipeline.utils import get_module_logger, unzip_file_from_url
+
+logger = get_module_logger(__name__)
+
+
+class TribalETL(ExtractTransformLoad):
+    def __init__(self):
+        self.GEOJSON_BASE_PATH = self.DATA_PATH / "tribal" / "geojson"
+        self.CSV_BASE_PATH = self.DATA_PATH / "tribal" / "csv"
+        self.NATIONAL_TRIBAL_GEOJSON_PATH = self.GEOJSON_BASE_PATH / "usa.json"
+        self.USA_TRIBAL_DF_LIST = []
+
+    def extract(self) -> None:
+        """Extract the tribal geojson zip files from Justice40 S3 data folder
+
+        Returns:
+            None
+        """
+        logger.info("Downloading Tribal Data")
+
+        bia_geojson_url = "https://justice40-data.s3.amazonaws.com/data-sources/BIA_National_LAR_json.zip"
+        alaska_geojson_url = "https://justice40-data.s3.amazonaws.com/data-sources/Alaska_Native_Villages_json.zip"
+
+        unzip_file_from_url(
+            bia_geojson_url,
+            self.TMP_PATH,
+            self.DATA_PATH / "tribal" / "geojson" / "bia_national_lar",
+        )
+
+        unzip_file_from_url(
+            alaska_geojson_url,
+            self.TMP_PATH,
+            self.DATA_PATH / "tribal" / "geojson" / "alaska_native_villages",
+        )
+        pass
+
+    def _transform_bia_national_lar(self, tribal_geojson_path: Path) -> None:
+        """Transform the Tribal BIA National Lar Geodataframe and appends it to the
+        national Tribal Dataframe List
+
+        Args:
+            tribal_geojson_path (Path): the Path to the Tribal Geojson
+
+        Returns:
+            None
+        """
+
+        bia_national_lar_df = gpd.read_file(tribal_geojson_path)
+
+        bia_national_lar_df.drop(
+            ["OBJECTID", "GISAcres", "Shape_Length", "Shape_Area"],
+            axis=1,
+            inplace=True,
+        )
+
+        bia_national_lar_df.rename(
+            columns={"TSAID": "tribalId", "LARName": "landAreaName"},
+            inplace=True,
+        )
+
+        self.USA_TRIBAL_DF_LIST.append(bia_national_lar_df)
+
+    def _transform_bia_aian_supplemental(
+        self, tribal_geojson_path: Path
+    ) -> None:
+        """Transform the Tribal BIA Supplemental Geodataframe and appends it to the
+        national Tribal Dataframe List
+
+        Args:
+            tribal_geojson_path (Path): the Path to the Tribal Geojson
+
+        Returns:
+            None
+        """
+
+        bia_aian_supplemental_df = gpd.read_file(tribal_geojson_path)
+
+        bia_aian_supplemental_df.drop(
+            ["OBJECTID", "GISAcres", "Source", "Shape_Length", "Shape_Area"],
+            axis=1,
+            inplace=True,
+        )
+
+        bia_aian_supplemental_df.rename(
+            columns={"Land_Area_": "landAreaName"},
+            inplace=True,
+        )
+
+        self.USA_TRIBAL_DF_LIST.append(bia_aian_supplemental_df)
+
+    def _transform_bia_tsa(self, tribal_geojson_path: Path) -> None:
+        """Transform the Tribal BIA TSA Geodataframe and appends it to the
+        national Tribal Dataframe List
+
+        Args:
+            tribal_geojson_path (Path): the Path to the Tribal Geojson
+
+        Returns:
+            None
+        """
+
+        bia_tsa_df = gpd.read_file(tribal_geojson_path)
+
+        bia_tsa_df.drop(
+            ["OBJECTID", "GISAcres", "Shape_Length", "Shape_Area"],
+            axis=1,
+            inplace=True,
+        )
+
+        bia_tsa_df.rename(
+            columns={"TSAID": "tribalId", "LARName": "landAreaName"},
+            inplace=True,
+        )
+
+        self.USA_TRIBAL_DF_LIST.append(bia_tsa_df)
+
+    def _transform_alaska_native_villages(
+        self, tribal_geojson_path: Path
+    ) -> None:
+        """Transform the Alaska Native Villages Geodataframe and appends it to the
+        national Tribal Dataframe List
+
+        Args:
+            tribal_geojson_path (Path): the Path to the Tribal Geojson
+
+        Returns:
+            None
+        """
+
+        alaska_native_villages_df = gpd.read_file(tribal_geojson_path)
+
+        alaska_native_villages_df.rename(
+            columns={
+                "GlobalID": "tribalId",
+                "TRIBALOFFICENAME": "landAreaName",
+            },
+            inplace=True,
+        )
+
+        self.USA_TRIBAL_DF_LIST.append(alaska_native_villages_df)
+
+    def transform(self) -> None:
+        """Transform the tribal geojson files to generate national CSVs and GeoJSONs
+
+        Returns:
+            None
+        """
+        logger.info("Transforming Tribal Data")
+
+        # load the geojsons
+        bia_national_lar_geojson = (
+            self.GEOJSON_BASE_PATH / "bia_national_lar" / "BIA_TSA.json"
+        )
+        bia_aian_supplemental_geojson = (
+            self.GEOJSON_BASE_PATH
+            / "bia_national_lar"
+            / "BIA_AIAN_Supplemental.json"
+        )
+        bia_tsa_geojson_geojson = (
+            self.GEOJSON_BASE_PATH / "bia_national_lar" / "BIA_TSA.json"
+        )
+        alaska_native_villages_geojson = (
+            self.GEOJSON_BASE_PATH
+            / "alaska_native_villages"
+            / "AlaskaNativeVillages.gdb.geojson"
+        )
+
+        self._transform_bia_national_lar(bia_national_lar_geojson)
+        self._transform_bia_aian_supplemental(bia_aian_supplemental_geojson)
+        self._transform_bia_tsa(bia_tsa_geojson_geojson)
+        self._transform_alaska_native_villages(alaska_native_villages_geojson)
+
+    def load(self) -> None:
+        """Create tribal national CSV and GeoJSON
+
+        Returns:
+            None
+        """
+        logger.info("Saving Tribal GeoJson and CSV")
+
+        usa_tribal_df = gpd.GeoDataFrame(
+            pd.concat(self.USA_TRIBAL_DF_LIST, ignore_index=True)
+        )
+        usa_tribal_df = usa_tribal_df.to_crs(
+            "+proj=longlat +ellps=WGS84 +datum=WGS84 +no_defs"
+        )
+        logger.info("Writing national geojson file")
+        usa_tribal_df.to_file(
+            self.NATIONAL_TRIBAL_GEOJSON_PATH, driver="GeoJSON"
+        )

data/data-pipeline/data_pipeline/etl/sources/tribal/etl_utils.py

@@ -0,0 +1,28 @@
+from pathlib import Path
+
+from data_pipeline.utils import (
+    get_module_logger,
+    remove_all_from_dir,
+    remove_files_from_dir,
+)
+
+
+logger = get_module_logger(__name__)
+
+
+def reset_data_directories(
+    data_path: Path,
+) -> None:
+    """Empties all tribal files"""
+    tribal_data_path = data_path / "tribal"
+
+    # csv
+    csv_path = tribal_data_path / "csv"
+    remove_files_from_dir(
+        csv_path,
+        ".csv",
+    )
+
+    # geojson
+    geojson_path = tribal_data_path / "geojson"
+    remove_all_from_dir(geojson_path)

data/data-pipeline/data_pipeline/tile/generate.py

@@ -7,8 +7,19 @@ from data_pipeline.utils import get_module_logger, remove_all_from_dir
 logger = get_module_logger(__name__)
 
 
-def generate_tiles(data_path: Path) -> None:
+def generate_tiles(data_path: Path, generate_tribal_layer: bool) -> None:
+    """Generates map tiles from geojson files
 
+    Args:
+        data_path (Path):  Path to data folder
+        generate_tribal_layer (bool): If true, generate the tribal layer of the map
+
+    Returns:
+        None
+    """
+
+    def _generate_score_tiles() -> None:
+        """Generates score map tiles"""
         score_tiles_path = data_path / "score" / "tiles"
         high_tile_path = score_tiles_path / "high"
         low_tile_path = score_tiles_path / "low"
@@ -59,3 +70,33 @@ def generate_tiles(data_path: Path) -> None:
         cmd += f"--output-to-directory={low_tile_path} --layer=blocks "
         cmd += str(score_geojson_dir / "usa-low.json")
         call(cmd, shell=True)
+
+    def _generate_tribal_tiles() -> None:
+        """Generates tribal layer tiles"""
+        tribal_tiles_path = data_path / "tribal" / "tiles"
+        tribal_geojson_dir = data_path / "tribal" / "geojson"
+
+        # remove existing mbtiles file
+        remove_all_from_dir(tribal_tiles_path)
+
+        # generate mbtiles file
+        logger.info("Generating Tribal mbtiles file")
+        cmd = "tippecanoe "
+        cmd += "--layer=blocks "
+        cmd += f"--output={tribal_tiles_path}/usa.mbtiles "
+        cmd += str(tribal_geojson_dir / "usa.json")
+        call(cmd, shell=True)
+
+        # generate mvts
+        logger.info("Generating Tribal mvt folders and files")
+        cmd = "tippecanoe "
+        cmd += "--no-tile-compression "
+        cmd += "--drop-densest-as-needed "
+        cmd += f"--output-to-directory={tribal_tiles_path} --layer=blocks "
+        cmd += str(tribal_geojson_dir / "usa.json")
+        call(cmd, shell=True)
+
+    if generate_tribal_layer:
+        _generate_tribal_tiles()
+    else:
+        _generate_score_tiles()