Merge branch 'emma-nechamkin/1849-income-imputation-cleanup' of github.com:usds/justice40-tool into emma-nechamkin/1849-income-imputation-cleanup

data/data-pipeline/data_pipeline/etl/constants.py

@@ -95,12 +95,6 @@ DATASET_LIST = [
         "class_name": "GeoCorrETL",
         "is_memory_intensive": False,
     },
-    {
-        "name": "child_opportunity_index",
-        "module_dir": "child_opportunity_index",
-        "class_name": "ChildOpportunityIndex",
-        "is_memory_intensive": False,
-    },
     {
         "name": "mapping_inequality",
         "module_dir": "mapping_inequality",

data/data-pipeline/data_pipeline/etl/score/constants.py

@@ -397,7 +397,7 @@ TILES_SCORE_FLOAT_COLUMNS = [
     # Geojson cannot support nulls in a boolean column when we create tiles;
     # to preserve null character, we coerce to floats for all fields
     # that use null to signify missing information in a boolean field.
-    field_names.ELIGIBLE_FUDS_BINARY_FIELD_NAME, 
-    field_names.AML_BOOLEAN, 
+    field_names.ELIGIBLE_FUDS_BINARY_FIELD_NAME,
+    field_names.AML_BOOLEAN,
     field_names.HISTORIC_REDLINING_SCORE_EXCEEDED
 ]

data/data-pipeline/data_pipeline/etl/score/etl_score.py

@@ -42,10 +42,9 @@ class ScoreETL(ExtractTransformLoad):
         self.doe_energy_burden_df: pd.DataFrame
         self.national_risk_index_df: pd.DataFrame
         self.geocorr_urban_rural_df: pd.DataFrame
-        self.persistent_poverty_df: pd.DataFrame
         self.census_decennial_df: pd.DataFrame
         self.census_2010_df: pd.DataFrame
-        self.child_opportunity_index_df: pd.DataFrame
+        self.national_tract_df: pd.DataFrame
         self.hrs_df: pd.DataFrame
         self.dot_travel_disadvantage_df: pd.DataFrame
         self.fsf_flood_df: pd.DataFrame
@@ -159,16 +158,6 @@ class ScoreETL(ExtractTransformLoad):
             low_memory=False,
         )
 
-        # Load persistent poverty
-        persistent_poverty_csv = (
-            constants.DATA_PATH / "dataset" / "persistent_poverty" / "usa.csv"
-        )
-        self.persistent_poverty_df = pd.read_csv(
-            persistent_poverty_csv,
-            dtype={self.GEOID_TRACT_FIELD_NAME: "string"},
-            low_memory=False,
-        )
-
         # Load decennial census data
         census_decennial_csv = (
             constants.DATA_PATH
@@ -192,19 +181,6 @@ class ScoreETL(ExtractTransformLoad):
             low_memory=False,
         )
 
-        # Load COI data
-        child_opportunity_index_csv = (
-            constants.DATA_PATH
-            / "dataset"
-            / "child_opportunity_index"
-            / "usa.csv"
-        )
-        self.child_opportunity_index_df = pd.read_csv(
-            child_opportunity_index_csv,
-            dtype={self.GEOID_TRACT_FIELD_NAME: "string"},
-            low_memory=False,
-        )
-
         # Load HRS data
         hrs_csv = (
             constants.DATA_PATH / "dataset" / "historic_redlining" / "usa.csv"
@@ -216,6 +192,15 @@ class ScoreETL(ExtractTransformLoad):
             low_memory=False,
         )
 
+        national_tract_csv = constants.DATA_CENSUS_CSV_FILE_PATH
+        self.national_tract_df = pd.read_csv(
+            national_tract_csv,
+            names=[self.GEOID_TRACT_FIELD_NAME],
+            dtype={self.GEOID_TRACT_FIELD_NAME: "string"},
+            low_memory=False,
+            header=None,
+        )
+
     def _join_tract_dfs(self, census_tract_dfs: list) -> pd.DataFrame:
         logger.info("Joining Census Tract dataframes")
 
@@ -363,12 +348,10 @@ class ScoreETL(ExtractTransformLoad):
             self.doe_energy_burden_df,
             self.ejscreen_df,
             self.geocorr_urban_rural_df,
-            self.persistent_poverty_df,
             self.national_risk_index_df,
             self.census_acs_median_incomes_df,
             self.census_decennial_df,
             self.census_2010_df,
-            self.child_opportunity_index_df,
             self.hrs_df,
             self.dot_travel_disadvantage_df,
             self.fsf_flood_df,
@@ -384,8 +367,21 @@ class ScoreETL(ExtractTransformLoad):
 
         census_tract_df = self._join_tract_dfs(census_tract_dfs)
 
-        # If GEOID10s are read as numbers instead of strings, the initial 0 is dropped,
-        # and then we get too many CBG rows (one for 012345 and one for 12345).
+        # Drop tracts that don't exist in the 2010 tracts
+        pre_join_len = census_tract_df[field_names.GEOID_TRACT_FIELD].nunique()
+
+        census_tract_df = census_tract_df.merge(
+            self.national_tract_df,
+            on="GEOID10_TRACT",
+            how="inner",
+        )
+        assert (
+            census_tract_df.shape[0] <= pre_join_len
+        ), "Join against national tract list ADDED rows"
+        logger.info(
+            "Dropped %s tracts not in the 2010 tract data",
+            pre_join_len - census_tract_df[field_names.GEOID_TRACT_FIELD].nunique()
+        )
 
         # Now sanity-check the merged df.
         self._census_tract_df_sanity_check(
@@ -455,9 +451,6 @@ class ScoreETL(ExtractTransformLoad):
             field_names.CENSUS_UNEMPLOYMENT_FIELD_2010,
             field_names.CENSUS_POVERTY_LESS_THAN_100_FPL_FIELD_2010,
             field_names.CENSUS_DECENNIAL_TOTAL_POPULATION_FIELD_2009,
-            field_names.EXTREME_HEAT_FIELD,
-            field_names.HEALTHY_FOOD_FIELD,
-            field_names.IMPENETRABLE_SURFACES_FIELD,
             field_names.UST_FIELD,
             field_names.DOT_TRAVEL_BURDEN_FIELD,
             field_names.FUTURE_FLOOD_RISK_FIELD,
@@ -479,7 +472,6 @@ class ScoreETL(ExtractTransformLoad):
 
         non_numeric_columns = [
             self.GEOID_TRACT_FIELD_NAME,
-            field_names.PERSISTENT_POVERTY_FIELD,
             field_names.TRACT_ELIGIBLE_FOR_NONNATURAL_THRESHOLD,
             field_names.AGRICULTURAL_VALUE_BOOL_FIELD,
         ]
@@ -509,10 +501,6 @@ class ScoreETL(ExtractTransformLoad):
             # This low field will not exist yet, it is only calculated for the
             # percentile.
             # TODO: This will come from the YAML dataset config
-            ReversePercentile(
-                field_name=field_names.READING_FIELD,
-                low_field_name=field_names.LOW_READING_FIELD,
-            ),
             ReversePercentile(
                 field_name=field_names.MEDIAN_INCOME_AS_PERCENT_OF_AMI_FIELD,
                 low_field_name=field_names.LOW_MEDIAN_INCOME_AS_PERCENT_OF_AMI_FIELD,

data/data-pipeline/data_pipeline/etl/score/etl_score_post.py

@@ -45,7 +45,6 @@ class PostScoreETL(ExtractTransformLoad):
         self.input_counties_df: pd.DataFrame
         self.input_states_df: pd.DataFrame
         self.input_score_df: pd.DataFrame
-        self.input_national_tract_df: pd.DataFrame
 
         self.output_score_county_state_merged_df: pd.DataFrame
         self.output_score_tiles_df: pd.DataFrame
@@ -92,7 +91,9 @@ class PostScoreETL(ExtractTransformLoad):
     def _extract_score(self, score_path: Path) -> pd.DataFrame:
         logger.info("Reading Score CSV")
         df = pd.read_csv(
-            score_path, dtype={self.GEOID_TRACT_FIELD_NAME: "string"}
+            score_path,
+            dtype={self.GEOID_TRACT_FIELD_NAME: "string"},
+            low_memory=False,
         )
 
         # Convert total population to an int
@@ -102,18 +103,6 @@ class PostScoreETL(ExtractTransformLoad):
 
         return df
 
-    def _extract_national_tract(
-        self, national_tract_path: Path
-    ) -> pd.DataFrame:
-        logger.info("Reading national tract file")
-        return pd.read_csv(
-            national_tract_path,
-            names=[self.GEOID_TRACT_FIELD_NAME],
-            dtype={self.GEOID_TRACT_FIELD_NAME: "string"},
-            low_memory=False,
-            header=None,
-        )
-
     def extract(self) -> None:
         logger.info("Starting Extraction")
 
@@ -136,9 +125,6 @@ class PostScoreETL(ExtractTransformLoad):
         self.input_score_df = self._extract_score(
             constants.DATA_SCORE_CSV_FULL_FILE_PATH
         )
-        self.input_national_tract_df = self._extract_national_tract(
-            constants.DATA_CENSUS_CSV_FILE_PATH
-        )
 
     def _transform_counties(
         self, initial_counties_df: pd.DataFrame
@@ -185,7 +171,6 @@ class PostScoreETL(ExtractTransformLoad):
 
     def _create_score_data(
         self,
-        national_tract_df: pd.DataFrame,
         counties_df: pd.DataFrame,
         states_df: pd.DataFrame,
         score_df: pd.DataFrame,
@@ -217,28 +202,11 @@ class PostScoreETL(ExtractTransformLoad):
             right_on=self.STATE_CODE_COLUMN,
             how="left",
         )
-
-        # check if there are census tracts without score
-        logger.info("Removing tract rows without score")
-
-        # merge census tracts with score
-        merged_df = national_tract_df.merge(
-            score_county_state_merged,
-            on=self.GEOID_TRACT_FIELD_NAME,
-            how="left",
-        )
-
-        # recast population to integer
-        score_county_state_merged["Total population"] = (
-            merged_df["Total population"].fillna(0).astype(int)
-        )
-
-        de_duplicated_df = merged_df.dropna(
-            subset=[DISADVANTAGED_COMMUNITIES_FIELD]
-        )
-
+        assert score_county_merged[
+            self.GEOID_TRACT_FIELD_NAME
+        ].is_unique, "Merging state/county data introduced duplicate rows"
         # set the score to the new df
-        return de_duplicated_df
+        return score_county_state_merged
 
     def _create_tile_data(
         self,
@@ -427,7 +395,6 @@ class PostScoreETL(ExtractTransformLoad):
         transformed_score = self._transform_score(self.input_score_df)
 
         output_score_county_state_merged_df = self._create_score_data(
-            self.input_national_tract_df,
             transformed_counties,
             transformed_states,
             transformed_score,

data/data-pipeline/data_pipeline/etl/score/tests/test_score_post.py

@@ -67,14 +67,12 @@ def test_transform_score(etl, score_data_initial, score_transformed_expected):
 # pylint: disable=too-many-arguments
 def test_create_score_data(
     etl,
-    national_tract_df,
     counties_transformed_expected,
     states_transformed_expected,
     score_transformed_expected,
     score_data_expected,
 ):
     score_data_actual = etl._create_score_data(
-        national_tract_df,
         counties_transformed_expected,
         states_transformed_expected,
         score_transformed_expected,

data/data-pipeline/data_pipeline/etl/sources/tribal/etl.py

@@ -59,7 +59,7 @@ class TribalETL(ExtractTransformLoad):
         )
 
         bia_national_lar_df.rename(
-            columns={"TSAID": "tribalId", "LARName": "landAreaName"},
+            columns={"LARID": "tribalId", "LARName": "landAreaName"},
             inplace=True,
         )
 
@@ -154,7 +154,9 @@ class TribalETL(ExtractTransformLoad):
 
         # load the geojsons
         bia_national_lar_geojson = (
-            self.GEOJSON_BASE_PATH / "bia_national_lar" / "BIA_TSA.json"
+            self.GEOJSON_BASE_PATH
+            / "bia_national_lar"
+            / "BIA_National_LAR.json"
         )
         bia_aian_supplemental_geojson = (
             self.GEOJSON_BASE_PATH

data/data-pipeline/data_pipeline/score/field_names.py

@@ -318,21 +318,6 @@ MARYLAND_EJSCREEN_SCORE_FIELD: str = "Maryland Environmental Justice Score"
 MARYLAND_EJSCREEN_BURDENED_THRESHOLD_FIELD: str = (
     "Maryland EJSCREEN Priority Community"
 )
-# Child Opportunity Index data
-# Summer days with maximum temperature above 90F.
-EXTREME_HEAT_FIELD = "Summer days above 90F"
-
-# Percentage households without a car located further than a half-mile from the
-# nearest supermarket.
-HEALTHY_FOOD_FIELD = "Percent low access to healthy food"
-
-# Percentage impenetrable surface areas such as rooftops, roads or parking lots.
-IMPENETRABLE_SURFACES_FIELD = "Percent impenetrable surface areas"
-
-# Percentage third graders scoring proficient on standardized reading tests,
-# converted to NAEP scale score points.
-READING_FIELD = "Third grade reading proficiency"
-LOW_READING_FIELD = "Low third grade reading proficiency"
 
 # Alternative energy-related definition of DACs
 ENERGY_RELATED_COMMUNITIES_DEFINITION_ALTERNATIVE = (

data/data-pipeline/data_pipeline/tests/score/fixtures.py

@@ -1,12 +1,217 @@
 import pandas as pd
 import pytest
 from data_pipeline.config import settings
-from data_pipeline.score import field_names
+from data_pipeline.score.field_names import GEOID_TRACT_FIELD
+from data_pipeline.etl.score import constants
 
 
 @pytest.fixture(scope="session")
 def final_score_df():
     return pd.read_csv(
         settings.APP_ROOT / "data" / "score" / "csv" / "full" / "usa.csv",
-        dtype={field_names.GEOID_TRACT_FIELD: str},
+        dtype={GEOID_TRACT_FIELD: str},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def census_df():
+    census_csv = constants.DATA_PATH / "dataset" / "census_acs_2019" / "usa.csv"
+    return pd.read_csv(
+        census_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def ejscreen_df():
+    ejscreen_csv = constants.DATA_PATH / "dataset" / "ejscreen" / "usa.csv"
+    return pd.read_csv(
+        ejscreen_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def hud_housing_df():
+    hud_housing_csv = (
+        constants.DATA_PATH / "dataset" / "hud_housing" / "usa.csv"
+    )
+    return pd.read_csv(
+        hud_housing_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def cdc_places_df():
+    cdc_places_csv = constants.DATA_PATH / "dataset" / "cdc_places" / "usa.csv"
+    return pd.read_csv(
+        cdc_places_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def census_acs_median_incomes_df():
+    census_acs_median_incomes_csv = (
+        constants.DATA_PATH
+        / "dataset"
+        / "census_acs_median_income_2019"
+        / "usa.csv"
+    )
+    return pd.read_csv(
+        census_acs_median_incomes_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def cdc_life_expectancy_df():
+    cdc_life_expectancy_csv = (
+        constants.DATA_PATH / "dataset" / "cdc_life_expectancy" / "usa.csv"
+    )
+    return pd.read_csv(
+        cdc_life_expectancy_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def doe_energy_burden_df():
+    doe_energy_burden_csv = (
+        constants.DATA_PATH / "dataset" / "doe_energy_burden" / "usa.csv"
+    )
+    return pd.read_csv(
+        doe_energy_burden_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def national_risk_index_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "national_risk_index" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def dot_travel_disadvantage_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "travel_composite" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def fsf_fire_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "fsf_wildfire_risk" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def fsf_flood_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "fsf_flood_risk" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def nature_deprived_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "nlcd_nature_deprived" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def eamlis_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "eamlis" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def fuds_df():
+    return pd.read_csv(
+        constants.DATA_PATH / "dataset" / "us_army_fuds" / "usa.csv",
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def geocorr_urban_rural_df():
+    geocorr_urban_rural_csv = (
+        constants.DATA_PATH / "dataset" / "geocorr" / "usa.csv"
+    )
+    return pd.read_csv(
+        geocorr_urban_rural_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def census_decennial_df():
+    census_decennial_csv = (
+        constants.DATA_PATH / "dataset" / "census_decennial_2010" / "usa.csv"
+    )
+    return pd.read_csv(
+        census_decennial_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def census_2010_df():
+    census_2010_csv = (
+        constants.DATA_PATH / "dataset" / "census_acs_2010" / "usa.csv"
+    )
+    return pd.read_csv(
+        census_2010_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def hrs_df():
+    hrs_csv = constants.DATA_PATH / "dataset" / "historic_redlining" / "usa.csv"
+
+    return pd.read_csv(
+        hrs_csv,
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+    )
+
+
+@pytest.fixture()
+def national_tract_df():
+    national_tract_csv = constants.DATA_CENSUS_CSV_FILE_PATH
+    return pd.read_csv(
+        national_tract_csv,
+        names=[GEOID_TRACT_FIELD],
+        dtype={GEOID_TRACT_FIELD: "string"},
+        low_memory=False,
+        header=None,
     )

data/data-pipeline/data_pipeline/tests/score/test_calculation.py

@@ -28,7 +28,6 @@ class PercentileTestConfig:
         return self.percentile_column_name
 
 
-### TODO: we need to blow this out for all eight categories
 def _check_percentile_against_threshold(df, config: PercentileTestConfig):
     """Note - for the purpose of testing, this fills with False"""
     is_minimum_flagged_ok = (

data/data-pipeline/data_pipeline/tests/score/test_output.py

@@ -1,12 +1,37 @@
-# flake8: noqa: W0613,W0611,F811
+# flake8: noqa: W0613,W0611,F811,
+# pylint: disable=unused-import,too-many-arguments
 from dataclasses import dataclass
 from typing import List
 import pytest
 import pandas as pd
+import numpy as np
 from data_pipeline.score import field_names
-from .fixtures import final_score_df  # pylint: disable=unused-import
+from data_pipeline.score.field_names import GEOID_TRACT_FIELD
+from .fixtures import (
+    final_score_df,
+    ejscreen_df,
+    hud_housing_df,
+    census_df,
+    cdc_places_df,
+    census_acs_median_incomes_df,
+    cdc_life_expectancy_df,
+    doe_energy_burden_df,
+    national_risk_index_df,
+    dot_travel_disadvantage_df,
+    fsf_fire_df,
+    nature_deprived_df,
+    eamlis_df,
+    fuds_df,
+    geocorr_urban_rural_df,
+    census_decennial_df,
+    census_2010_df,
+    hrs_df,
+    national_tract_df,
+)
+
 
 pytestmark = pytest.mark.smoketest
+UNMATCHED_TRACK_THRESHOLD = 1000
 
 
 def _helper_test_count_exceeding_threshold(df, col, error_check=1000):
@@ -203,3 +228,98 @@ def test_donut_hole_addition_to_score_n(final_score_df):
     assert (
         new_donuts > 0
     ), "FYI: The adjacency index is doing nothing. Consider removing it?"
+
+
+def test_data_sources(
+    final_score_df,
+    hud_housing_df,
+    ejscreen_df,
+    census_df,
+    cdc_places_df,
+    census_acs_median_incomes_df,
+    cdc_life_expectancy_df,
+    doe_energy_burden_df,
+    national_risk_index_df,
+    dot_travel_disadvantage_df,
+    fsf_fire_df,
+    nature_deprived_df,
+    eamlis_df,
+    fuds_df,
+    geocorr_urban_rural_df,
+    census_decennial_df,
+    census_2010_df,
+    hrs_df,
+):
+    data_sources = {
+        key: value for key, value in locals().items() if key != "final_score_df"
+    }
+
+    for data_source_name, data_source in data_sources.items():
+        final = "final_"
+        df: pd.DataFrame = final_score_df.merge(
+            data_source,
+            on=GEOID_TRACT_FIELD,
+            indicator="MERGE",
+            suffixes=(final, f"_{data_source_name}"),
+            how="outer",
+        )
+
+        # Make our lists of columns for later comparison
+        core_cols = data_source.columns.intersection(
+            final_score_df.columns
+        ).drop(GEOID_TRACT_FIELD)
+        data_source_columns = [f"{col}_{data_source_name}" for col in core_cols]
+        final_columns = [f"{col}{final}" for col in core_cols]
+        assert (
+            final_columns
+        ), f"No columns from data source show up in final score in source {data_source_name}"
+
+        # Make sure we have NAs for any tracts in the final data that aren't
+        # covered in the  final data
+        assert np.all(df[df.MERGE == "left_only"][final_columns].isna())
+
+        # Make sure the datasource doesn't have a ton of unmatched tracts, implying it
+        # has moved to 2020 tracts
+        assert len(df[df.MERGE == "right_only"]) < UNMATCHED_TRACK_THRESHOLD
+
+        df = df[df.MERGE == "both"]
+
+        # Compare every column for equality, using close equality for numerics and
+        # `equals` equality for non-numeric columns
+        for final_column, data_source_column in zip(
+            data_source_columns, final_columns
+        ):
+            error_message = (
+                f"Column {final_column} not equal "
+                f"between {data_source_name} and final score"
+            )
+            if df[final_column].dtype in [
+                np.dtype(object),
+                np.dtype(bool),
+                np.dtype(str),
+            ]:
+                assert df[final_column].equals(
+                    df[data_source_column]
+                ), error_message
+            else:
+                assert np.allclose(
+                    df[final_column],
+                    df[data_source_column],
+                    equal_nan=True,
+                ), error_message
+
+
+def test_output_tracts(final_score_df, national_tract_df):
+    df = final_score_df.merge(
+        national_tract_df,
+        on=GEOID_TRACT_FIELD,
+        how="outer",
+        indicator="MERGE",
+    )
+    counts = df.value_counts("MERGE")
+    assert counts.loc["left_only"] == 0
+    assert counts.loc["right_only"] == 0
+
+
+def test_all_tracts_have_scores(final_score_df):
+    assert not final_score_df[field_names.SCORE_N_COMMUNITIES].isna().any()

data/data-pipeline/data_pipeline/tests/score/test_tiles_smoketests.py

@@ -0,0 +1,221 @@
+# flake8: noqa: W0613,W0611,F811
+from dataclasses import dataclass
+from typing import Optional
+import pandas as pd
+import numpy as np
+import pytest
+from data_pipeline.config import settings
+from data_pipeline.etl.score import constants
+from data_pipeline.score import field_names
+from data_pipeline.etl.score.constants import (
+    TILES_SCORE_COLUMNS,
+    THRESHOLD_COUNT_TO_SHOW_FIELD_NAME,
+    USER_INTERFACE_EXPERIENCE_FIELD_NAME,
+)
+from .fixtures import final_score_df  # pylint: disable=unused-import
+
+pytestmark = pytest.mark.smoketest
+
+
+@pytest.fixture
+def tiles_df(scope="session"):
+    return pd.read_csv(
+        settings.APP_ROOT / "data" / "score" / "csv" / "tiles" / "usa.csv",
+        dtype={"GTF": str},
+        low_memory=False,
+    )
+
+
+PERCENTILE_FIELDS = [
+    "DF_PFS",
+    "AF_PFS",
+    "HDF_PFS",
+    "DSF_PFS",
+    "EBF_PFS",
+    "EALR_PFS",
+    "EBLR_PFS",
+    "EPLR_PFS",
+    "HBF_PFS",
+    "LLEF_PFS",
+    "LIF_PFS",
+    "LMI_PFS",
+    "MHVF_PFS",
+    "PM25F_PFS",
+    "P100_PFS",
+    "P200_I_PFS",
+    "P200_PFS",
+    "LPF_PFS",
+    "KP_PFS",
+    "NPL_PFS",
+    "RMP_PFS",
+    "TSDF_PFS",
+    "TF_PFS",
+    "UF_PFS",
+    "WF_PFS",
+    "UST_PFS",
+]
+
+
+def test_percentiles(tiles_df):
+    for col in PERCENTILE_FIELDS:
+        assert tiles_df[col].min() >= 0, f"Negative percentile exists for {col}"
+        assert (
+            tiles_df[col].max() <= 1
+        ), f"Percentile over 100th exists for {col}"
+        assert (tiles_df[col].median() >= 0.4) & (
+            tiles_df[col].median() <= 0.6
+        ), f"Percentile distribution for {col} is decidedly not uniform"
+    return True
+
+
+def test_count_of_fips_codes(tiles_df, final_score_df):
+    final_score_state_count = (
+        final_score_df[field_names.GEOID_TRACT_FIELD].str[:2].nunique()
+    )
+    assert (
+        tiles_df["GTF"].str[:2].nunique() == final_score_state_count
+    ), "Some states are missing from tiles"
+    pfs_columns = tiles_df.filter(like="PFS").columns.to_list()
+    assert (
+        tiles_df.dropna(how="all", subset=pfs_columns)["GTF"].str[:2].nunique()
+        == 56
+    ), "Some states do not have any percentile data"
+
+
+def test_column_presence(tiles_df):
+    expected_column_names = set(TILES_SCORE_COLUMNS.values()) | {
+        THRESHOLD_COUNT_TO_SHOW_FIELD_NAME,
+        USER_INTERFACE_EXPERIENCE_FIELD_NAME,
+    }
+    actual_column_names = set(tiles_df.columns)
+    extra_columns = actual_column_names - expected_column_names
+    missing_columns = expected_column_names - expected_column_names
+    assert not (
+        extra_columns
+    ), f"tiles/usa.csv has columns not specified in TILE_SCORE_COLUMNS: {extra_columns}"
+    assert not (
+        missing_columns
+    ), f"tiles/usa.csv is missing columns from TILE_SCORE_COLUMNS: {missing_columns}"
+
+
+def test_tract_equality(tiles_df, final_score_df):
+    assert tiles_df.shape[0] == final_score_df.shape[0]
+
+
+@dataclass
+class ColumnValueComparison:
+    final_score_column: pd.Series
+    tiles_column: pd.Series
+    col_name: str
+
+    @property
+    def _is_tiles_column_fake_bool(self) -> bool:
+        if self.tiles_column.dtype == np.dtype("float64"):
+            fake_bool = {1.0, 0.0, None}
+            # Replace the nans in the column values with None for
+            # so we can just use issubset below
+            col_values = set(
+                not np.isnan(val) and val or None
+                for val in self.tiles_column.value_counts(dropna=False).index
+            )
+            return len(col_values) <= 3 and col_values.issubset(fake_bool)
+        return False
+
+    @property
+    def _is_dtype_ok(self) -> bool:
+        if self.final_score_column.dtype == self.tiles_column.dtype:
+            return True
+        if (
+            self.final_score_column.dtype == np.dtype("O")
+            and self.tiles_column.dtype == np.dtype("float64")
+            and self._is_tiles_column_fake_bool
+        ):
+            return True
+        return False
+
+    def __post_init__(self):
+        self._is_value_ok = False
+        if self._is_dtype_ok:
+            if self._is_tiles_column_fake_bool:
+                # Cast to actual bool for useful comparison
+                self.tiles_column = self.tiles_column.apply(
+                    lambda val: bool(val) if not np.isnan(val) else np.nan
+                )
+            if self.tiles_column.dtype == np.dtype("float64"):
+                self._is_value_ok = np.allclose(
+                    self.final_score_column,
+                    self.tiles_column,
+                    atol=float(f"1e-{constants.TILES_ROUND_NUM_DECIMALS}"),
+                    equal_nan=True,
+                )
+            else:
+                self._is_value_ok = self.final_score_column.equals(
+                    self.tiles_column
+                )
+
+    def __bool__(self) -> bool:
+        return self._is_dtype_ok and bool(self._is_value_ok)
+
+    @property
+    def error_message(self) -> Optional[str]:
+        if not self._is_dtype_ok:
+            return (
+                f"Column {self.col_name} dtype mismatch: "
+                f"score_df: {self.final_score_column.dtype}, "
+                f"tile_df: {self.tiles_column.dtype}"
+            )
+        if not self._is_value_ok:
+            return f"Column {self.col_name} value mismatch"
+        return None
+
+
+def test_for_column_fidelitiy_from_score(tiles_df, final_score_df):
+    # Verify the following:
+    # * Shape and tracts match between score csv and tile csv
+    # * If you rename score CSV columns, you are able to make the tile csv
+    # * The dtypes and values of every renamed score column is "equal" to
+    #   every tile column
+    #   * Because tiles use rounded floats, we use close with a tolerance
+    assert (
+        set(TILES_SCORE_COLUMNS.values()) - set(tiles_df.columns) == set()
+    ), "Some TILES_SCORE_COLUMNS are missing from the tiles dataframe"
+
+    # Keep only the tiles score columns in the final score data
+    final_score_df = final_score_df.rename(columns=TILES_SCORE_COLUMNS).drop(
+        final_score_df.columns.difference(TILES_SCORE_COLUMNS.values()),
+        axis=1,
+        errors="ignore",
+    )
+
+    # Drop the UI-specific fields from the tiles dataframe
+    tiles_df = tiles_df.drop(
+        columns=[
+            "SF",  # State field, added at geoscore
+            "CF",  # County field, added at geoscore,
+            constants.THRESHOLD_COUNT_TO_SHOW_FIELD_NAME,
+            constants.USER_INTERFACE_EXPERIENCE_FIELD_NAME,
+        ]
+    )
+    errors = []
+
+    # Are the dataframes the same shape truly
+    assert tiles_df.shape == final_score_df.shape
+    assert tiles_df["GTF"].equals(final_score_df["GTF"])
+    assert sorted(tiles_df.columns) == sorted(final_score_df.columns)
+
+    # Are all the dtypes and values the same?
+    comparisons = []
+    for col_name in final_score_df.columns:
+        value_comparison = ColumnValueComparison(
+            final_score_df[col_name], tiles_df[col_name], col_name
+        )
+        comparisons.append(value_comparison)
+    errors = [comp for comp in comparisons if not comp]
+    error_message = "\n".join(error.error_message for error in errors)
+    assert not errors, error_message
+
+
+def test_for_state_names(tiles_df):
+    states = tiles_df["SF"].value_counts(dropna=False).index
+    assert np.nan not in states
+    assert states.all()

data/data-pipeline/poetry.lock

@@ -98,10 +98,10 @@ optional = false
 python-versions = ">=3.5"
 
 [package.extras]
-tests_no_zope = ["cloudpickle", "pytest-mypy-plugins", "mypy (>=0.900,!=0.940)", "pytest (>=4.3.0)", "pympler", "hypothesis", "coverage[toml] (>=5.0.2)"]
-tests = ["cloudpickle", "zope.interface", "pytest-mypy-plugins", "mypy (>=0.900,!=0.940)", "pytest (>=4.3.0)", "pympler", "hypothesis", "coverage[toml] (>=5.0.2)"]
-docs = ["sphinx-notfound-page", "zope.interface", "sphinx", "furo"]
-dev = ["cloudpickle", "pre-commit", "sphinx-notfound-page", "sphinx", "furo", "zope.interface", "pytest-mypy-plugins", "mypy (>=0.900,!=0.940)", "pytest (>=4.3.0)", "pympler", "hypothesis", "coverage[toml] (>=5.0.2)"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
+docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"]
 
 [[package]]
 name = "babel"
@@ -356,14 +356,14 @@ optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-yaml = ["ruamel.yaml"]
-vault = ["hvac"]
-toml = ["toml"]
-test = ["configobj", "hvac", "redis", "codecov", "toml", "python-dotenv", "django", "flask (>=0.12)", "radon", "flake8-todo", "flake8-print", "flake8-debugger", "pep8-naming", "flake8", "pytest-mock", "pytest-xdist", "pytest-cov", "pytest"]
-redis = ["redis"]
-ini = ["configobj"]
+all = ["redis", "ruamel.yaml", "configobj", "hvac"]
 configobj = ["configobj"]
-all = ["hvac", "configobj", "ruamel.yaml", "redis"]
+ini = ["configobj"]
+redis = ["redis"]
+test = ["pytest", "pytest-cov", "pytest-xdist", "pytest-mock", "flake8", "pep8-naming", "flake8-debugger", "flake8-print", "flake8-todo", "radon", "flask (>=0.12)", "django", "python-dotenv", "toml", "codecov", "redis", "hvac", "configobj"]
+toml = ["toml"]
+vault = ["hvac"]
+yaml = ["ruamel.yaml"]
 
 [[package]]
 name = "entrypoints"
@@ -583,15 +583,15 @@ pygments = "*"
 traitlets = ">=4.2"
 
 [package.extras]
-test = ["numpy (>=1.17)", "ipykernel", "nbformat", "pygments", "testpath", "requests", "nose (>=0.10.1)"]
-qtconsole = ["qtconsole"]
-parallel = ["ipyparallel"]
-notebook = ["ipywidgets", "notebook"]
-nbformat = ["nbformat"]
-nbconvert = ["nbconvert"]
-kernel = ["ipykernel"]
+all = ["Sphinx (>=1.3)", "ipykernel", "ipyparallel", "ipywidgets", "nbconvert", "nbformat", "nose (>=0.10.1)", "notebook", "numpy (>=1.17)", "pygments", "qtconsole", "requests", "testpath"]
 doc = ["Sphinx (>=1.3)"]
-all = ["testpath", "requests", "qtconsole", "pygments", "numpy (>=1.17)", "notebook", "nose (>=0.10.1)", "nbformat", "nbconvert", "ipywidgets", "ipyparallel", "ipykernel", "Sphinx (>=1.3)"]
+kernel = ["ipykernel"]
+nbconvert = ["nbconvert"]
+nbformat = ["nbformat"]
+notebook = ["notebook", "ipywidgets"]
+parallel = ["ipyparallel"]
+qtconsole = ["qtconsole"]
+test = ["nose (>=0.10.1)", "requests", "testpath", "pygments", "nbformat", "ipykernel", "numpy (>=1.17)"]
 
 [[package]]
 name = "ipython-genutils"
@@ -794,7 +794,7 @@ tornado = "*"
 traitlets = ">=4.1"
 
 [package.extras]
-test = ["nbformat", "nose", "pip", "requests", "mock"]
+test = ["mock", "requests", "pip", "nose", "nbformat"]
 
 [[package]]
 name = "jupyter-core"
@@ -809,7 +809,7 @@ pywin32 = {version = ">=1.0", markers = "sys_platform == \"win32\" and platform_
 traitlets = "*"
 
 [package.extras]
-test = ["pytest-timeout", "pytest-cov", "pytest", "pre-commit", "ipykernel"]
+test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"]
 
 [[package]]
 name = "jupyter-highlight-selected-word"
@@ -981,10 +981,10 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*"
 
 [package.extras]
-source = ["Cython (>=0.29.7)"]
-htmlsoup = ["beautifulsoup4"]
-html5 = ["html5lib"]
 cssselect = ["cssselect (>=0.7)"]
+html5 = ["html5lib"]
+htmlsoup = ["beautifulsoup4"]
+source = ["Cython (>=0.29.7)"]
 
 [[package]]
 name = "markupsafe"
@@ -1024,12 +1024,12 @@ marshmallow = ">=3.13.0,<4.0"
 typing-inspect = ">=0.7.1"
 
 [package.extras]
-union = ["typeguard"]
-tests = ["typing-extensions (>=3.7.2)", "pytest-mypy-plugins (>=1.2.0)", "pytest (>=5.4)"]
-lint = ["pre-commit (>=2.17,<3.0)"]
-enum = ["marshmallow-enum"]
+dev = ["marshmallow-enum", "typeguard", "pre-commit (>=2.17,<3.0)", "sphinx", "pytest (>=5.4)", "pytest-mypy-plugins (>=1.2.0)", "typing-extensions (>=3.7.2)"]
 docs = ["sphinx"]
-dev = ["typing-extensions (>=3.7.2)", "pytest-mypy-plugins (>=1.2.0)", "pytest (>=5.4)", "sphinx", "pre-commit (>=2.17,<3.0)", "typeguard", "marshmallow-enum"]
+enum = ["marshmallow-enum"]
+lint = ["pre-commit (>=2.17,<3.0)"]
+tests = ["pytest (>=5.4)", "pytest-mypy-plugins (>=1.2.0)", "typing-extensions (>=3.7.2)"]
+union = ["typeguard"]
 
 [[package]]
 name = "marshmallow-enum"
@@ -1167,9 +1167,9 @@ tornado = ">=6.1"
 traitlets = ">=4.2.1"
 
 [package.extras]
-test = ["requests-unixsocket", "pytest-tornasync", "pytest-cov", "selenium (==4.1.5)", "nbval", "testpath", "requests", "coverage", "pytest"]
+docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"]
 json-logging = ["json-logging"]
-docs = ["myst-parser", "sphinx-rtd-theme", "sphinxcontrib-github-alt", "nbsphinx", "sphinx"]
+test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium (==4.1.5)", "pytest-cov", "pytest-tornasync", "requests-unixsocket"]
 
 [[package]]
 name = "nbclient"
@@ -1276,9 +1276,9 @@ tornado = ">=6.1"
 traitlets = ">=4.2.1"
 
 [package.extras]
-test = ["requests-unixsocket", "pytest-cov", "selenium", "nbval", "testpath", "requests", "coverage", "pytest"]
+docs = ["sphinx", "nbsphinx", "sphinxcontrib-github-alt", "sphinx-rtd-theme", "myst-parser"]
 json-logging = ["json-logging"]
-docs = ["myst-parser", "sphinx-rtd-theme", "sphinxcontrib-github-alt", "nbsphinx", "sphinx"]
+test = ["pytest", "coverage", "requests", "testpath", "nbval", "selenium", "pytest-cov", "requests-unixsocket"]
 
 [[package]]
 name = "notebook-shim"
@@ -1292,7 +1292,7 @@ python-versions = ">=3.7"
 jupyter-server = ">=1.8,<2.0"
 
 [package.extras]
-test = ["pytest-console-scripts", "pytest-tornasync", "pytest"]
+test = ["pytest", "pytest-tornasync", "pytest-console-scripts"]
 
 [[package]]
 name = "numpy"
@@ -1471,8 +1471,8 @@ optional = false
 python-versions = ">=3.6"
 
 [package.extras]
-dev = ["pre-commit", "tox"]
-testing = ["pytest", "pytest-benchmark"]
+testing = ["pytest-benchmark", "pytest"]
+dev = ["tox", "pre-commit"]
 
 [[package]]
 name = "prometheus-client"
@@ -1505,7 +1505,7 @@ optional = false
 python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [package.extras]
-test = ["wmi", "pywin32", "enum34", "mock", "ipaddress"]
+test = ["ipaddress", "mock", "enum34", "pywin32", "wmi"]
 
 [[package]]
 name = "ptyprocess"
@@ -1613,7 +1613,7 @@ optional = false
 python-versions = ">=3.6.8"
 
 [package.extras]
-diagrams = ["jinja2", "railroad-diagrams"]
+diagrams = ["railroad-diagrams", "jinja2"]
 
 [[package]]
 name = "pyproj"
@@ -1667,7 +1667,7 @@ python-versions = ">=3.7"
 pytest = ">=5.0"
 
 [package.extras]
-dev = ["pytest-asyncio", "tox", "pre-commit"]
+dev = ["pre-commit", "tox", "pytest-asyncio"]
 
 [[package]]
 name = "pytest-snapshot"
@@ -1786,8 +1786,8 @@ idna = ">=2.5,<4"
 urllib3 = ">=1.21.1,<1.27"
 
 [package.extras]
-use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 socks = ["PySocks (>=1.5.6,!=1.5.7)"]
+use_chardet_on_py3 = ["chardet (>=3.0.2,<6)"]
 
 [[package]]
 name = "rtree"
@@ -1845,8 +1845,8 @@ optional = false
 python-versions = ">=2.7"
 
 [package.extras]
-doc = ["sphinx-rtd-theme", "sphinx"]
-dev = ["colorama (<=0.4.1)", "readme-renderer (<25.0)", "zest.releaser", "wheel", "flake8", "coverage", "check-manifest", "tox", "nose2", "Django (>=1.11)"]
+dev = ["Django (>=1.11)", "nose2", "tox", "check-manifest", "coverage", "flake8", "wheel", "zest.releaser", "readme-renderer (<25.0)", "colorama (<=0.4.1)"]
+doc = ["sphinx", "sphinx-rtd-theme"]
 
 [[package]]
 name = "send2trash"
@@ -1939,7 +1939,7 @@ pywinpty = {version = ">=1.1.0", markers = "os_name == \"nt\""}
 tornado = ">=6.1.0"
 
 [package.extras]
-test = ["pytest (>=6.0)", "pytest-timeout", "pre-commit"]
+test = ["pre-commit", "pytest-timeout", "pytest (>=6.0)"]
 
 [[package]]
 name = "textwrap3"
@@ -2015,8 +2015,8 @@ toml = ">=0.9.4"
 virtualenv = ">=16.0.0,<20.0.0 || >20.0.0,<20.0.1 || >20.0.1,<20.0.2 || >20.0.2,<20.0.3 || >20.0.3,<20.0.4 || >20.0.4,<20.0.5 || >20.0.5,<20.0.6 || >20.0.6,<20.0.7 || >20.0.7"
 
 [package.extras]
-testing = ["pathlib2 (>=2.3.3)", "psutil (>=5.6.1)", "pytest-randomly (>=1.0.0)", "pytest-mock (>=1.10.0)", "pytest-cov (>=2.5.1)", "pytest (>=4.0.0)", "freezegun (>=0.3.11)", "flaky (>=3.4.0)"]
-docs = ["towncrier (>=18.5.0)", "sphinxcontrib-autoprogram (>=0.1.5)", "sphinx (>=2.0.0)", "pygments-github-lexers (>=0.0.5)"]
+docs = ["pygments-github-lexers (>=0.0.5)", "sphinx (>=2.0.0)", "sphinxcontrib-autoprogram (>=0.1.5)", "towncrier (>=18.5.0)"]
+testing = ["flaky (>=3.4.0)", "freezegun (>=0.3.11)", "pytest (>=4.0.0)", "pytest-cov (>=2.5.1)", "pytest-mock (>=1.10.0)", "pytest-randomly (>=1.0.0)", "psutil (>=5.6.1)", "pathlib2 (>=2.3.3)"]
 
 [[package]]
 name = "tox-poetry"
@@ -2032,7 +2032,7 @@ toml = "*"
 tox = {version = ">=3.7.0", markers = "python_version >= \"3\""}
 
 [package.extras]
-test = ["coverage", "pytest", "pycodestyle", "pylint"]
+test = ["pylint", "pycodestyle", "pytest", "coverage"]
 
 [[package]]
 name = "tqdm"
@@ -2059,7 +2059,7 @@ optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-test = ["pytest", "pre-commit"]
+test = ["pre-commit", "pytest"]
 
 [[package]]
 name = "types-requests"
@@ -2212,11 +2212,11 @@ python-versions = "^3.8"
 content-hash = "f3d61a8c4ca54c580ba8d459aa76a9d956e046c2b8339602497ce53393ba9983"
 
 [metadata.files]
-ansiwrap = [
-    {file = "ansiwrap-0.8.4-py2.py3-none-any.whl", hash = "sha256:7b053567c88e1ad9eed030d3ac41b722125e4c1271c8a99ade797faff1f49fb1"},
-    {file = "ansiwrap-0.8.4.zip", hash = "sha256:ca0c740734cde59bf919f8ff2c386f74f9a369818cdc60efe94893d01ea8d9b7"},
+ansiwrap = []
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