241 lines
91 KiB
Text
241 lines
91 KiB
Text
|
#NEXUS
|
||
|
|
|
||
|
|
Begin taxa;
|
||
|
|
Dimensions ntax=114;
|
||
|
|
Taxlabels
|
||
|
|
MVi_Calais.FRA_01.16_B3
|
||
|
|
MVi_Manchester.GBR_31.13__B3
|
||
|
|
MVs_Alabama.USA_13.14__B3
|
||
|
|
MVs_California.USA_05.14__B3
|
||
|
|
MVs_California.USA_08.14_3__B3
|
||
|
|
MVs_California.USA_1.19__B3
|
||
|
|
MVs_California.USA_12.19_2_B3
|
||
|
|
MVs_California.USA_12.19_3_B3
|
||
|
|
MVs_California.USA_12.19__B3
|
||
|
|
MVs_California.USA_13.19_3_B3
|
||
|
|
MVs_California.USA_13.19_4_B3
|
||
|
|
MVs_California.USA_13.19_5_B3
|
||
|
|
MVs_California.USA_13.19__B3
|
||
|
|
MVs_California.USA_14.19_2_B3
|
||
|
|
MVs_California.USA_14.19__B3
|
||
|
|
MVs_California.USA_15.19__B3
|
||
|
|
MVs_California.USA_16.19_3_B3
|
||
|
|
MVs_California.USA_16.19_4_B3
|
||
|
|
MVs_California.USA_16.19_7_B3
|
||
|
|
MVs_California.USA_16.19_8_B3
|
||
|
|
MVs_California.USA_16.19_9_B3
|
||
|
|
MVs_California.USA_17.19_2_B3
|
||
|
|
MVs_California.USA_17.19__B3
|
||
|
|
MVs_California.USA_18.19_4_B3
|
||
|
|
MVs_California.USA_20.19_2_B3
|
||
|
|
MVs_California.USA_20.19__B3
|
||
|
|
MVs_California.USA_22.19_3_B3
|
||
|
|
MVs_California.USA_22.19__B3
|
||
|
|
MVs_California.USA_32.19__B3
|
||
|
|
MVs_California.USA_34.19__B3
|
||
|
|
MVs_California.USA_41.19__B3
|
||
|
|
MVs_California.USA_43.19_2_B3
|
||
|
|
MVs_California.USA_43.19__B3
|
||
|
|
MVs_California.USA_50.19__B3
|
||
|
|
MVs_California.USA_7.19__B3
|
||
|
|
MVs_California.USA_9.19_2_B3
|
||
|
|
MVs_California.USA_9.19_3_B3
|
||
|
|
MVs_California.USA_9.19__B3
|
||
|
|
MVs_Dartford.GBR_2.14__B3
|
||
|
|
MVs_London.GBR_3.14_2__B3
|
||
|
|
MVs_London.GBR_3.14_3__B3
|
||
|
|
MVs_London.GBR_3.14__B3
|
||
|
|
MVs_London.GBR_4.14_2__B3
|
||
|
|
MVs_London.GBR_41.13__B3
|
||
|
|
MVs_Luton.GBR_4.14__B3
|
||
|
|
MVs_Manchester.GBR_7.12_2_B3
|
||
|
|
MVs_NewMexico.USA_38.21
|
||
|
|
MVs_NewcastleuponTyne.GBR_35.13__B3
|
||
|
|
MVs_NewcastleuponTyne.GBR_9.14__B3
|
||
|
|
MVs_Padova.ITA_11.17_1_B3
|
||
|
|
MVs_Padova.ITA_12.17_1_B3
|
||
|
|
MVs_Padova.ITA_13.17_1_B3
|
||
|
|
MVs_Padova.ITA_13.17_2_B3
|
||
|
|
MVs_Padova.ITA_14.17_1_B3
|
||
|
|
MVs_Padova.ITA_14.17_2_B3
|
||
|
|
MVs_Padova.ITA_14.17_3_B3
|
||
|
|
MVs_Padova.ITA_14.17_4_B3
|
||
|
|
MVs_Padova.ITA_14.17_5_B3
|
||
|
|
MVs_Padova.ITA_14.17_7_B3
|
||
|
|
MVs_Padova.ITA_15.17_1_B3
|
||
|
|
MVs_Padova.ITA_15.17_2_B3
|
||
|
|
MVs_Padova.ITA_16.17_1_B3
|
||
|
|
MVs_Padova.ITA_16.17_2_B3
|
||
|
|
MVs_Padova.ITA_16.17_3_B3
|
||
|
|
MVs_Padova.ITA_16.17_4_B3
|
||
|
|
MVs_Padova.ITA_16.17_5_B3
|
||
|
|
MVs_Padova.ITA_16.17_6_B3
|
||
|
|
MVs_Padova.ITA_17.17_3_B3
|
||
|
|
MVs_Padova.ITA_19.17_1_B3
|
||
|
|
MVs_Padova.ITA_19.17_2_B3
|
||
|
|
MVs_Padova.ITA_20.17_1_B3
|
||
|
|
MVs_Padova.ITA_21.17_1_B3
|
||
|
|
MVs_Padova.ITA_21.17_2_B3
|
||
|
|
MVs_Padova.ITA_24.17_1_B3
|
||
|
|
MVs_Virginia.USA_35.21
|
||
|
|
MVs_Virginia.USA_35.21_4
|
||
|
|
MVs_Virginia.USA_35.21_5
|
||
|
|
MVs_Virginia.USA_35.21_6
|
||
|
|
MVs_Virginia.USA_36.21
|
||
|
|
MVs_Virginia.USA_36.21_2
|
||
|
|
MVs_Virginia.USA_36.21_3
|
||
|
|
MVs_Virginia.USA_36.21_4
|
||
|
|
MVs_Virginia.USA_37.21
|
||
|
|
MVs_Virginia.USA_37.21_2
|
||
|
|
MVs_Virginia.USA_38.21
|
||
|
|
MVs_Virginia.USA_39.21
|
||
|
|
MVs_Virginia.USA_39.21_2
|
||
|
|
MVs_Virginia.USA_39.21_3
|
||
|
|
MVs_Virginia.USA_39.21_4
|
||
|
|
MVs_Virginia.USA_40.21
|
||
|
|
MVs_Virginia.USA_40.21_2
|
||
|
|
MVs_Virginia.USA_40.21_3
|
||
|
|
MVs_Virginia.USA_41.21
|
||
|
|
MVs_Wisconsin.USA_35.21
|
||
|
|
MVs_Wisconsin.USA_37.21
|
||
|
|
MVs_Wisconsin.USA_37.21_2
|
||
|
|
MVs_Wisconsin.USA_37.21_3
|
||
|
|
MVs_Wisconsin.USA_37.21_4
|
||
|
|
MVs_Wisconsin.USA_37.21_5
|
||
|
|
MVs_Wisconsin.USA_38.21
|
||
|
|
MVs_Wisconsin.USA_39.21
|
||
|
|
MVs_Wisconsin.USA_39.21_10
|
||
|
|
MVs_Wisconsin.USA_39.21_11
|
||
|
|
MVs_Wisconsin.USA_39.21_12
|
||
|
|
MVs_Wisconsin.USA_39.21_13
|
||
|
|
MVs_Wisconsin.USA_39.21_14
|
||
|
|
MVs_Wisconsin.USA_39.21_15
|
||
|
|
MVs_Wisconsin.USA_39.21_2
|
||
|
|
MVs_Wisconsin.USA_39.21_3
|
||
|
|
MVs_Wisconsin.USA_39.21_4
|
||
|
|
MVs_Wisconsin.USA_39.21_5
|
||
|
|
MVs_Wisconsin.USA_39.21_6
|
||
|
|
MVs_Wisconsin.USA_39.21_7
|
||
|
|
MVs_Wisconsin.USA_39.21_8_1
|
||
|
|
;
|
||
|
|
End;
|
||
|
|
Begin trees;
|
||
|
|
Translate
|
||
|
|
1 MVi_Calais.FRA_01.16_B3,
|
||
|
|
2 MVi_Manchester.GBR_31.13__B3,
|
||
|
|
3 MVs_Alabama.USA_13.14__B3,
|
||
|
|
4 MVs_California.USA_05.14__B3,
|
||
|
|
5 MVs_California.USA_08.14_3__B3,
|
||
|
|
6 MVs_California.USA_1.19__B3,
|
||
|
|
7 MVs_California.USA_12.19_2_B3,
|
||
|
|
8 MVs_California.USA_12.19_3_B3,
|
||
|
|
9 MVs_California.USA_12.19__B3,
|
||
|
|
10 MVs_California.USA_13.19_3_B3,
|
||
|
|
11 MVs_California.USA_13.19_4_B3,
|
||
|
|
12 MVs_California.USA_13.19_5_B3,
|
||
|
|
13 MVs_California.USA_13.19__B3,
|
||
|
|
14 MVs_California.USA_14.19_2_B3,
|
||
|
|
15 MVs_California.USA_14.19__B3,
|
||
|
|
16 MVs_California.USA_15.19__B3,
|
||
|
|
17 MVs_California.USA_16.19_3_B3,
|
||
|
|
18 MVs_California.USA_16.19_4_B3,
|
||
|
|
19 MVs_California.USA_16.19_7_B3,
|
||
|
|
20 MVs_California.USA_16.19_8_B3,
|
||
|
|
21 MVs_California.USA_16.19_9_B3,
|
||
|
|
22 MVs_California.USA_17.19_2_B3,
|
||
|
|
23 MVs_California.USA_17.19__B3,
|
||
|
|
24 MVs_California.USA_18.19_4_B3,
|
||
|
|
25 MVs_California.USA_20.19_2_B3,
|
||
|
|
26 MVs_California.USA_20.19__B3,
|
||
|
|
27 MVs_California.USA_22.19_3_B3,
|
||
|
|
28 MVs_California.USA_22.19__B3,
|
||
|
|
29 MVs_California.USA_32.19__B3,
|
||
|
|
30 MVs_California.USA_34.19__B3,
|
||
|
|
31 MVs_California.USA_41.19__B3,
|
||
|
|
32 MVs_California.USA_43.19_2_B3,
|
||
|
|
33 MVs_California.USA_43.19__B3,
|
||
|
|
34 MVs_California.USA_50.19__B3,
|
||
|
|
35 MVs_California.USA_7.19__B3,
|
||
|
|
36 MVs_California.USA_9.19_2_B3,
|
||
|
|
37 MVs_California.USA_9.19_3_B3,
|
||
|
|
38 MVs_California.USA_9.19__B3,
|
||
|
|
39 MVs_Dartford.GBR_2.14__B3,
|
||
|
|
40 MVs_London.GBR_3.14_2__B3,
|
||
|
|
41 MVs_London.GBR_3.14_3__B3,
|
||
|
|
42 MVs_London.GBR_3.14__B3,
|
||
|
|
43 MVs_London.GBR_4.14_2__B3,
|
||
|
|
44 MVs_London.GBR_41.13__B3,
|
||
|
|
45 MVs_Luton.GBR_4.14__B3,
|
||
|
|
46 MVs_Manchester.GBR_7.12_2_B3,
|
||
|
|
47 MVs_NewMexico.USA_38.21,
|
||
|
|
48 MVs_NewcastleuponTyne.GBR_35.13__B3,
|
||
|
|
49 MVs_NewcastleuponTyne.GBR_9.14__B3,
|
||
|
|
50 MVs_Padova.ITA_11.17_1_B3,
|
||
|
|
51 MVs_Padova.ITA_12.17_1_B3,
|
||
|
|
52 MVs_Padova.ITA_13.17_1_B3,
|
||
|
|
53 MVs_Padova.ITA_13.17_2_B3,
|
||
|
|
54 MVs_Padova.ITA_14.17_1_B3,
|
||
|
|
55 MVs_Padova.ITA_14.17_2_B3,
|
||
|
|
56 MVs_Padova.ITA_14.17_3_B3,
|
||
|
|
57 MVs_Padova.ITA_14.17_4_B3,
|
||
|
|
58 MVs_Padova.ITA_14.17_5_B3,
|
||
|
|
59 MVs_Padova.ITA_14.17_7_B3,
|
||
|
|
60 MVs_Padova.ITA_15.17_1_B3,
|
||
|
|
61 MVs_Padova.ITA_15.17_2_B3,
|
||
|
|
62 MVs_Padova.ITA_16.17_1_B3,
|
||
|
|
63 MVs_Padova.ITA_16.17_2_B3,
|
||
|
|
64 MVs_Padova.ITA_16.17_3_B3,
|
||
|
|
65 MVs_Padova.ITA_16.17_4_B3,
|
||
|
|
66 MVs_Padova.ITA_16.17_5_B3,
|
||
|
|
67 MVs_Padova.ITA_16.17_6_B3,
|
||
|
|
68 MVs_Padova.ITA_17.17_3_B3,
|
||
|
|
69 MVs_Padova.ITA_19.17_1_B3,
|
||
|
|
70 MVs_Padova.ITA_19.17_2_B3,
|
||
|
|
71 MVs_Padova.ITA_20.17_1_B3,
|
||
|
|
72 MVs_Padova.ITA_21.17_1_B3,
|
||
|
|
73 MVs_Padova.ITA_21.17_2_B3,
|
||
|
|
74 MVs_Padova.ITA_24.17_1_B3,
|
||
|
|
75 MVs_Virginia.USA_35.21,
|
||
|
|
76 MVs_Virginia.USA_35.21_4,
|
||
|
|
77 MVs_Virginia.USA_35.21_5,
|
||
|
|
78 MVs_Virginia.USA_35.21_6,
|
||
|
|
79 MVs_Virginia.USA_36.21,
|
||
|
|
80 MVs_Virginia.USA_36.21_2,
|
||
|
|
81 MVs_Virginia.USA_36.21_3,
|
||
|
|
82 MVs_Virginia.USA_36.21_4,
|
||
|
|
83 MVs_Virginia.USA_37.21,
|
||
|
|
84 MVs_Virginia.USA_37.21_2,
|
||
|
|
85 MVs_Virginia.USA_38.21,
|
||
|
|
86 MVs_Virginia.USA_39.21,
|
||
|
|
87 MVs_Virginia.USA_39.21_2,
|
||
|
|
88 MVs_Virginia.USA_39.21_3,
|
||
|
|
89 MVs_Virginia.USA_39.21_4,
|
||
|
|
90 MVs_Virginia.USA_40.21,
|
||
|
|
91 MVs_Virginia.USA_40.21_2,
|
||
|
|
92 MVs_Virginia.USA_40.21_3,
|
||
|
|
93 MVs_Virginia.USA_41.21,
|
||
|
|
94 MVs_Wisconsin.USA_35.21,
|
||
|
|
95 MVs_Wisconsin.USA_37.21,
|
||
|
|
96 MVs_Wisconsin.USA_37.21_2,
|
||
|
|
97 MVs_Wisconsin.USA_37.21_3,
|
||
|
|
98 MVs_Wisconsin.USA_37.21_4,
|
||
|
|
99 MVs_Wisconsin.USA_37.21_5,
|
||
|
|
100 MVs_Wisconsin.USA_38.21,
|
||
|
|
101 MVs_Wisconsin.USA_39.21,
|
||
|
|
102 MVs_Wisconsin.USA_39.21_10,
|
||
|
|
103 MVs_Wisconsin.USA_39.21_11,
|
||
|
|
104 MVs_Wisconsin.USA_39.21_12,
|
||
|
|
105 MVs_Wisconsin.USA_39.21_13,
|
||
|
|
106 MVs_Wisconsin.USA_39.21_14,
|
||
|
|
107 MVs_Wisconsin.USA_39.21_15,
|
||
|
|
108 MVs_Wisconsin.USA_39.21_2,
|
||
|
|
109 MVs_Wisconsin.USA_39.21_3,
|
||
|
|
110 MVs_Wisconsin.USA_39.21_4,
|
||
|
|
111 MVs_Wisconsin.USA_39.21_5,
|
||
|
|
112 MVs_Wisconsin.USA_39.21_6,
|
||
|
|
113 MVs_Wisconsin.USA_39.21_7,
|
||
|
|
114 MVs_Wisconsin.USA_39.21_8_1
|
||
|
|
;
|
||
|
|
tree TREE1 = ((1[&height=5.788926940640509,height_95%_HPD={5.7889269406393815,5.788926940639392},height_median=5.788926940639385,height_range={5.788926940639371,5.788926940639406},length=14.931256703493823,length_95%_HPD={11.790407085134703,18.177395222500905},length_median=14.818725872350736,length_range={9.973658380635424,23.084493560302647}]:14.931256703492704,((((2[&height=8.210958904108956,height_95%_HPD={8.210958904109699,8.21095890410971},height_median=8.210958904109702,height_range={8.210958904109692,8.210958904109724},length=2.671499921234613,length_95%_HPD={1.6181378738241108,3.7946364391679097},length_median=2.6293184927514766,length_range={1.0332709420973831,5.773543239278979}]:2.6686051211020434,(((((50[&height=4.605365296802405,height_95%_HPD={4.605365296803704,4.605365296803718},height_median=4.605365296803711,height_range={4.605365296803697,4.605365296803733},length=0.05654770207567993,length_95%_HPD={3.91783657249789E-6,0.17598368904479145},length_median=0.037374967978252016,length_range={3.91783657249789E-6,0.5032941092354726}]:0.04323245727070102,57[&height=4.547945205480288,height_95%_HPD={4.547945205479429,4.547945205479444},height_median=4.5479452054794365,height_range={4.547945205479422,4.547945205479458},length=0.11288578023801006,length_95%_HPD={0.0016545155214267027,0.271817956178797},length_median=0.09247687139530036,length_range={7.650264240446347E-4,0.7179490484919775}]:0.10065254859281758)[&height=4.648597754073106,height_95%_HPD={4.605379843005032,4.734262460430006},height_median=4.636780123350951,height_range={4.605379843005032,4.874657203224388},length=0.05717404205155389,length_95%_HPD={6.527471157369291E-6,0.17470444815564434},length_median=0.042716946728980076,length_range={6.527471157369291E-6,0.39329795254921507},posterior=0.07242834925572095]:0.015032924691498195,53[&height=4.567123287672017,height_95%_HPD={4.567123287671386,4.5671232876714},height_median=4.567123287671393,height_range={4.567123287671379,4.567123287671414},length=0.060028452035720346,length_95%_HPD={3.6519113777444545E-7,0.1727361513543677},length_median=0.0442494211875637,length_range={3.6519113777444545E-7,0.62558766983787}]:0.09650739109258666)[&height=4.663630678764604,height_95%_HPD={4.60580903286775,4.760021664520622},height_median=4.652794453972579,height_range={4.60580903286775,4.896583500791458},length=0.06536503118338867,length_95%_HPD={1.9789911716827646E-4,0.20004531898532818},length_median=0.045725164639659255,length_range={1.9789911716827646E-4,0.3721371420333277},posterior=0.01594090202177294]:0.11535625204413513,(((56[&height=4.547945205480288,height_95%_HPD={4.547945205479429,4.547945205479444},height_median=4.5479452054794365,height_range={4.547945205479422,4.547945205479458},length=0.0646852624165207,length_95%_HPD={1.4276324193929213E-5,0.18278095048167842},length_median=0.04888768876756622,length_range={2.8783210268557013E-6,0.5351228413026412}]:0.04706210712451142,74[&height=4.356164383561391,height_95%_HPD={4.3561643835616835,4.356164383561698},height_median=4.356164383561691,height_range={4.356164383561676,4.356164383561712},length=0.25351621977823413,length_95%_HPD={0.09590010226181178,0.4258073906321016},length_median=0.23776206365678654,length_range={0.09590010226181178,0.8862762603225178}]:0.23884292904340843)[&height=4.5950073126048,height_95%_HPD={4.547976711074739,4.683310424568745},height_median=4.582923622870675,height_range={4.547976711074739,4.955434226679731},length=0.0572999184934184,length_95%_HPD={3.9000292417767923E-7,0.1770668518678491},length_median=0.03930651035424226,length_range={3.9000292417767923E-7,0.42872355680886187},posterior=0.06487447233948011]:0.027915466164442293,((63[&height=4.509589041097166,height_95%_HPD={4.509589041095971,4.509589041095985},height_median=4.509589041095978,height_range={4.509589041095964,4.509589041095996},length=0.07782019795273164,length_95%_HPD={5.575972618743208E-6,0.19513448370857134},length_median=0.06499118267576343,length_range={5.575972618743208E-6,0.5499883461804451}]:0.03842993444546661,65[&height=4.509589041097167,height_95%_HPD
|
||
|
|
End;
|